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  5. Ppi_g04269

Ppi_g04269 (LHCA1)


Aliases : LHCA1

Description : component *(LHCa1) of LHC-I complex & original description: none


Gene families : OG0002748 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002748_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g04269
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00175p00040360 LHCA1,... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.05 OrthoFinder output from all 47 species
AT3G54890 LHCA1 photosystem I light harvesting complex gene 1 0.08 OrthoFinder output from all 47 species
Adi_g076858 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g43112 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g16965 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.06 OrthoFinder output from all 47 species
Als_g13726 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.07 OrthoFinder output from all 47 species
Als_g25107 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g03905 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.09 OrthoFinder output from all 47 species
Aob_g13553 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g16356 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g39130 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g08720 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g53140 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene39517.t1 LHCA1, Aspi01Gene39517 component *(LHCa1) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0549.g076444 LHCA1 component *(LHCa1) of LHC-I complex & original... 0.03 OrthoFinder output from all 47 species
Cba_g26607 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.07G087800.1 LHCA1, Ceric.07G087800 component *(LHCa1) of LHC-I complex & original... 0.07 OrthoFinder output from all 47 species
Ceric.12G030000.1 LHCA1, Ceric.12G030000 component *(LHCa1) of LHC-I complex & original... 0.05 OrthoFinder output from all 47 species
Cre06.g283050 LHCA1 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.1 OrthoFinder output from all 47 species
Dac_g06854 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g34042 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.08 OrthoFinder output from all 47 species
Ehy_g21883 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01016295001 LHCA1 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.04 OrthoFinder output from all 47 species
Gb_18375 LHCA1 component LHCa1 of LHC-I complex 0.08 OrthoFinder output from all 47 species
LOC_Os06g21590.1 LHCA1, LOC_Os06g21590 component LHCa1 of LHC-I complex 0.05 OrthoFinder output from all 47 species
Len_g24144 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Len_g30462 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
MA_10431493g0010 LHCA1 component LHCa1 of LHC-I complex 0.05 OrthoFinder output from all 47 species
Mp2g15420.1 LHCA1 component LHCa1 of LHC-I complex 0.06 OrthoFinder output from all 47 species
Msp_g05868 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g00268 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g07161 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g30412 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g36756 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g45079 LHCA1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g01807 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g01863 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c3_12510V3.1 LHCA1, Pp3c3_12510 photosystem I light harvesting complex gene 1 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002720 LHCA1 component *(LHCa1) of LHC-I complex & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0079.g017788 LHCA1 component *(LHCa1) of LHC-I complex & original... 0.05 OrthoFinder output from all 47 species
Sam_g14315 No alias component *(LHCa1) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g14326 No alias component *(LHCa1) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g19176 No alias component *(LHCa1) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Smo423144 LHCA1 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.06 OrthoFinder output from all 47 species
Solyc05g056050.3.1 LHCA1, Solyc05g056050 component LHCa1 of LHC-I complex 0.08 OrthoFinder output from all 47 species
Spa_g13153 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g13154 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g09881 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g19220 LHCA1 component *(LHCa1) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e013742_P001 LHCA1, Zm00001e013742 component LHCa1 of LHC-I complex 0.04 OrthoFinder output from all 47 species
Zm00001e025141_P001 LHCA1, Zm00001e025141 component LHCa1 of LHC-I complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0008199 ferric iron binding IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 20 171
No external refs found!