Zm00001d025830 (GRMZM2G024466,...)


Aliases : GRMZM2G024466, GRMZM2G050882, GRMZM2G160473

Description : 27.1.20 RNA.processing.degradation dicer Encodes an RNase III-like enzyme that catalyzes processing of trans-acting small interfering RNA precursors in a distinct small RNA biogenesis pathway. The protein is also involved in the production of 21-nt primary siRNAs from both inverted-repeat constructs and endogenous sequences, as well as the RDR6-dependent 21-nt secondary siRNAs involved in long-range cell-to-cell signaling. It binds DRB4, a ds-RNA binding protein. dicer-like 4 (DCL4)


Gene families : OG_01_0000130 (Gene family) Phylogenetic Tree(s): OG0000130_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d025830
Cluster HCCA cluster: Cluster_286

Target Alias Description ECC score Gene Family Method Actions
AT1G01040 DCL1, CAF,... dicer-like 1 0.05 Gene family
AT3G03300 ATDCL2, DCL2 dicer-like 2 0.03 Gene family
AT5G20320 DCL4, ATDCL4 dicer-like 4 0.04 Gene family
Cpa|evm.model.tig00000741.30 No alias No description available 0.01 Gene family
Cre07.g345900 No alias No description available 0.04 Gene family
GSVIVT01001045001 No alias 27.1.20 RNA.processing.degradation dicer Encodes an... 0.05 Gene family
GSVIVT01035494001 No alias No description available 0.03 Gene family
MA_10437243g0010 No alias 27.1.20 RNA.processing.degradation dicer Encodes a Dicer... 0.02 Gene family
MA_10437243g0020 No alias 27.1.20 RNA.processing.degradation dicer Encodes a Dicer... 0.02 Gene family
MA_3182872g0010 No alias 27.1.20 RNA.processing.degradation dicer Encodes a Dicer... 0.02 Gene family
Smo444049 PACid_15413649 27.1.20 RNA.processing.degradation dicer Encodes an... 0.02 Gene family
Solyc08g067210.3.1 Solyc08g067210.3 No description available 0.03 Gene family
Solyc10g005130.3.1 Solyc10g005130.3 27.1.20 RNA.processing.degradation dicer Encodes a Dicer... 0.02 Gene family
Zm00001d042432 GRMZM5G814985 No description available 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000999 RNase_III_dom 755 885
IPR000999 RNase_III_dom 961 1070
IPR001650 Helicase_C 234 352
IPR005034 Dicer_dimerisation_dom 418 501
No external refs found!