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  5. Ppi_g03975

Ppi_g03975


Description : transcriptional co-regulator *(Oberon) & original description: none


Gene families : OG0000521 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000521_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g03975

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00013500 evm_27.TU.AmTr_v1... Protein OBERON 3 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00024p00014560 evm_27.TU.AmTr_v1... Protein OBERON 3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00103p00104550 evm_27.TU.AmTr_v1... Protein OBERON 4 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT5G48160 OBE2 Protein of unknown function (DUF1423) 0.03 OrthoFinder output from all 47 species
Adi_g077978 No alias transcriptional co-regulator *(Oberon) & original... 0.02 OrthoFinder output from all 47 species
Adi_g084447 OBE2 transcriptional co-regulator *(Oberon) & original... 0.02 OrthoFinder output from all 47 species
Adi_g103836 OBE2 transcriptional co-regulator *(Oberon) & original... 0.03 OrthoFinder output from all 47 species
Ala_g06624 OBE1 transcriptional co-regulator *(Oberon) & original... 0.02 OrthoFinder output from all 47 species
Als_g23885 No alias transcriptional co-regulator *(Oberon) & original... 0.02 OrthoFinder output from all 47 species
Als_g52234 No alias transcriptional co-regulator *(Oberon) & original... 0.03 OrthoFinder output from all 47 species
Aob_g21192 No alias transcriptional co-regulator *(Oberon) & original... 0.04 OrthoFinder output from all 47 species
Aob_g27012 No alias transcriptional co-regulator *(Oberon) & original... 0.02 OrthoFinder output from all 47 species
Aop_g06292 No alias transcriptional co-regulator *(Oberon) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene10941.t1 Aspi01Gene10941 transcriptional co-regulator *(Oberon) & original... 0.02 OrthoFinder output from all 47 species
Cba_g19917 No alias transcriptional co-regulator *(Oberon) & original... 0.02 OrthoFinder output from all 47 species
Ceric.15G012200.1 Ceric.15G012200 transcriptional co-regulator *(Oberon) & original... 0.04 OrthoFinder output from all 47 species
Ceric.18G008400.1 OBE2, Ceric.18G008400 transcriptional co-regulator *(Oberon) & original... 0.03 OrthoFinder output from all 47 species
Dac_g10938 No alias transcriptional co-regulator *(Oberon) & original... 0.02 OrthoFinder output from all 47 species
Dac_g20877 No alias transcriptional co-regulator *(Oberon) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g07773 No alias transcriptional co-regulator *(Oberon) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g22990 No alias transcriptional co-regulator *(Oberon) & original... 0.04 OrthoFinder output from all 47 species
Dde_g02398 No alias transcriptional co-regulator *(Oberon) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g02961 No alias transcriptional co-regulator *(Oberon) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g27694 OBE2 transcriptional co-regulator *(Oberon) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01032137001 No alias Protein OBERON 4 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Lfl_g04752 OBE2 transcriptional co-regulator *(Oberon) & original... 0.02 OrthoFinder output from all 47 species
MA_214119g0010 No alias Protein OBERON 4 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Msp_g14069 No alias transcriptional co-regulator *(Oberon) & original... 0.05 OrthoFinder output from all 47 species
Msp_g14429 No alias transcriptional co-regulator *(Oberon) & original... 0.03 OrthoFinder output from all 47 species
Msp_g40697 OBE1 transcriptional co-regulator *(Oberon) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g06741 OBE2 transcriptional co-regulator *(Oberon) & original... 0.03 OrthoFinder output from all 47 species
Ore_g10796 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16666 No alias transcriptional co-regulator *(Oberon) & original... 0.03 OrthoFinder output from all 47 species
Ore_g22510 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g27832 No alias transcriptional co-regulator *(Oberon) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g013014 OBE1 transcriptional co-regulator *(Oberon) & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0046.g013343 OBE2 A1-class (Pepsin) protease & original description: CDS=401-2110 0.02 OrthoFinder output from all 47 species
Sam_g13482 No alias transcriptional co-regulator *(Oberon) & original... 0.04 OrthoFinder output from all 47 species
Sam_g36358 No alias transcriptional co-regulator *(Oberon) & original... 0.02 OrthoFinder output from all 47 species
Sam_g44072 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g087490.4.1 Solyc01g087490 Protein OBERON 4 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Solyc05g054180.3.1 OBE2, Solyc05g054180 OBERON-like protein OS=Nicotiana benthamiana... 0.02 OrthoFinder output from all 47 species
Solyc07g047780.3.1 OBE2, Solyc07g047780 OBERON-like protein OS=Nicotiana benthamiana... 0.02 OrthoFinder output from all 47 species
Tin_g01081 OBE2 transcriptional co-regulator *(Oberon) & original... 0.02 OrthoFinder output from all 47 species
Tin_g11564 No alias transcriptional co-regulator *(Oberon) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e015252_P001 OBE2, Zm00001e015252 OBERON-like protein OS=Nicotiana benthamiana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
CC GO:0042575 DNA polymerase complex IEP HCCA
CC GO:0043625 delta DNA polymerase complex IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR032881 Oberon_PHD 884 1008
No external refs found!