LOC_Os10g33940.1


Description : transcription factor (ARF)


Gene families : OG_01_0000080 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000080_tree ,
OG_02_0001322 (LandPlants) Phylogenetic Tree(s): OG_02_0001322_tree ,
OG_03_0001040 (SeedPlants) Phylogenetic Tree(s): OG_03_0001040_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g33940.1
Cluster HCCA: Cluster_215

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00157690 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.02 Archaeplastida
AT1G19850 MP, IAA24, ARF5 Transcriptional factor B3 family protein /... 0.04 Archaeplastida
AT2G33860 ARF3, ETT Transcriptional factor B3 family protein /... 0.04 Archaeplastida
AT5G37020 ARF8, ATARF8 auxin response factor 8 0.03 Archaeplastida
GSVIVT01025159001 No alias RNA biosynthesis.transcriptional activation.B3... 0.05 Archaeplastida
GSVIVT01037136001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
Gb_32864 No alias transcription factor (ARF) 0.03 Archaeplastida
Gb_39686 No alias transcription factor (ARF) 0.03 Archaeplastida
Mp1g07070.1 No alias transcription factor (ARF) 0.02 Archaeplastida
Mp1g12750.1 No alias transcription factor (ARF) 0.02 Archaeplastida
Solyc01g096070.3.1 No alias transcription factor (ARF) 0.02 Archaeplastida
Solyc07g016180.3.1 No alias transcription factor (ARF) 0.04 Archaeplastida
Solyc07g042260.4.1 No alias transcription factor (ARF) 0.04 Archaeplastida
Solyc08g082630.3.1 No alias transcription factor (ARF) 0.02 Archaeplastida
Solyc10g086130.3.1 No alias transcription factor (ARF) 0.03 Archaeplastida
Solyc11g069190.2.1 No alias transcription factor (ARF) 0.05 Archaeplastida
Zm00001e003229_P002 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e006577_P003 No alias transcription factor (ARF) 0.02 Archaeplastida
Zm00001e012670_P001 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e013061_P001 No alias transcription factor (ARF) 0.04 Archaeplastida
Zm00001e016366_P002 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e018126_P002 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e041910_P003 No alias transcription factor (ARF) 0.03 Archaeplastida
Mp1g07070.1 No alias transcription factor (ARF) 0.02 LandPlants
Zm00001e012670_P001 No alias transcription factor (ARF) 0.03 LandPlants
Zm00001e013061_P001 No alias transcription factor (ARF) 0.02 LandPlants
Zm00001e004554_P002 No alias transcription factor (ARF) 0.03 SeedPlants
Zm00001e012670_P001 No alias transcription factor (ARF) 0.04 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR010525 Auxin_resp 288 371
IPR003340 B3_DNA-bd 128 229
No external refs found!