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  5. LOC_Os10g33874.1

LOC_Os10g33874.1


Description : Putative pentatricopeptide repeat-containing protein At1g13630 OS=Arabidopsis thaliana (sp|q9lmy5|ppr41_arath : 530.0)


Gene families : OG_01_0011533 (Archaeplastida) Phylogenetic Tree(s): OG_01_0011533_tree ,
OG_02_0011433 (LandPlants) Phylogenetic Tree(s): OG_02_0011433_tree ,
OG_03_0011536 (SeedPlants) Phylogenetic Tree(s): OG_03_0011536_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g33874.1
Cluster HCCA: Cluster_159

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00148p00070910 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AT1G13630 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 Archaeplastida
GSVIVT01010112001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
MA_137810g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
AMTR_s00148p00070910 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 LandPlants
AT1G13630 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 LandPlants
GSVIVT01010112001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 LandPlants
MA_137810g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 LandPlants
AMTR_s00148p00070910 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 SeedPlants
AT1G13630 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 SeedPlants
GSVIVT01010112001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 SeedPlants
MA_137810g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 586 635
IPR002885 Pentatricopeptide_repeat 217 248
IPR002885 Pentatricopeptide_repeat 658 704
IPR002885 Pentatricopeptide_repeat 517 565
IPR002885 Pentatricopeptide_repeat 375 424
IPR002885 Pentatricopeptide_repeat 274 319
IPR002885 Pentatricopeptide_repeat 442 473
IPR002885 Pentatricopeptide_repeat 343 373
IPR002885 Pentatricopeptide_repeat 730 759
IPR002885 Pentatricopeptide_repeat 171 198
No external refs found!