LOC_Os10g33230.1


Description : Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana (sp|q8w034|rnp1_arath : 237.0)


Gene families : OG_01_0000233 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000233_tree ,
OG_02_0000415 (LandPlants) Phylogenetic Tree(s): OG_02_0000415_tree ,
OG_03_0000490 (SeedPlants) Phylogenetic Tree(s): OG_03_0000490_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g33230.1
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00200350 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.05 Archaeplastida
AMTR_s00065p00083440 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00067p00185510 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.06 Archaeplastida
GSVIVT01016872001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_33485 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 Archaeplastida
Gb_35079 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 Archaeplastida
MA_125759g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.07 Archaeplastida
MA_141102g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 Archaeplastida
MA_473g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 Archaeplastida
Mp1g27850.1 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 Archaeplastida
Pp3c26_4470V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Archaeplastida
Pp3c2_9200V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Archaeplastida
Pp3c4_17440V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Archaeplastida
Solyc02g093340.3.1 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 Archaeplastida
Solyc03g005680.3.1 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 Archaeplastida
Solyc03g121710.2.1 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 Archaeplastida
Solyc07g045240.3.1 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.06 Archaeplastida
Solyc09g090520.3.1 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e004612_P001 No alias no hits & (original description: none) 0.15 Archaeplastida
Zm00001e012709_P005 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.11 Archaeplastida
Zm00001e014461_P003 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.19 Archaeplastida
Zm00001e024934_P002 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.11 Archaeplastida
Zm00001e030652_P001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.13 Archaeplastida
Zm00001e037155_P004 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.09 Archaeplastida
AMTR_s00065p00083440 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.04 LandPlants
AMTR_s00067p00185510 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.06 LandPlants
AT2G33410 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 LandPlants
GSVIVT01028394001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 LandPlants
Gb_33012 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 LandPlants
Gb_33485 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 LandPlants
Gb_35079 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 LandPlants
Pp3c1_33540V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.01 LandPlants
Pp3c2_9200V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 LandPlants
Smo172407 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.02 LandPlants
Smo4662 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.02 LandPlants
Solyc03g005680.3.1 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.07 LandPlants
Solyc09g090520.3.1 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 LandPlants
Zm00001e004612_P001 No alias no hits & (original description: none) 0.16 LandPlants
Zm00001e012709_P005 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.14 LandPlants
AMTR_s00065p00083440 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.02 SeedPlants
AMTR_s00067p00185510 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.06 SeedPlants
AT2G33410 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 SeedPlants
Gb_33012 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 SeedPlants
Gb_33485 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 SeedPlants
Gb_35079 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 SeedPlants
MA_10432683g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.01 SeedPlants
Solyc03g005680.3.1 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 SeedPlants
Solyc09g090520.3.1 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 SeedPlants
Zm00001e004612_P001 No alias no hits & (original description: none) 0.13 SeedPlants
Zm00001e012709_P005 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.14 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000504 RRM_dom 8 74
IPR000504 RRM_dom 130 187
No external refs found!