LOC_Os10g31910.1


Description : pectate lyase


Gene families : OG_01_0000134 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000134_tree ,
OG_02_0000111 (LandPlants) Phylogenetic Tree(s): OG_02_0000111_tree ,
OG_03_0000097 (SeedPlants) Phylogenetic Tree(s): OG_03_0000097_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g31910.1
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00189000 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.07 Archaeplastida
AMTR_s00078p00106380 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
AMTR_s00120p00111300 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.08 Archaeplastida
AT1G04680 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT1G67750 No alias Pectate lyase family protein 0.03 Archaeplastida
AT3G07010 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT3G24230 No alias Pectate lyase family protein 0.03 Archaeplastida
AT3G24670 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT3G27400 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT3G53190 No alias Pectin lyase-like superfamily protein 0.09 Archaeplastida
AT4G22080 RHS14 root hair specific 14 0.02 Archaeplastida
AT4G24780 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT5G09280 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT5G48900 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT5G63180 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
GSVIVT01008053001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
GSVIVT01011348001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
GSVIVT01016208001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
GSVIVT01016209001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
GSVIVT01033671001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.05 Archaeplastida
Gb_02248 No alias pectate lyase 0.03 Archaeplastida
Gb_19802 No alias pectate lyase 0.03 Archaeplastida
Gb_26755 No alias pectate lyase 0.03 Archaeplastida
LOC_Os04g05050.1 No alias pectate lyase 0.08 Archaeplastida
LOC_Os05g22800.1 No alias pectate lyase 0.03 Archaeplastida
MA_10430145g0030 No alias pectate lyase 0.06 Archaeplastida
MA_10437227g0020 No alias pectate lyase 0.02 Archaeplastida
MA_10437227g0030 No alias pectate lyase 0.02 Archaeplastida
MA_185203g0010 No alias pectate lyase 0.02 Archaeplastida
MA_203992g0010 No alias pectate lyase 0.02 Archaeplastida
MA_204440g0010 No alias Enzyme classification.EC_4 lyases.EC_4.2 carbon-oxygen... 0.06 Archaeplastida
MA_52869g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp3g01000.1 No alias pectate lyase 0.03 Archaeplastida
Pp3c10_20140V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c14_6710V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c1_33130V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c1_4040V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c3_20320V3.1 No alias Pectin lyase-like superfamily protein 0.08 Archaeplastida
Pp3c3_35190V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Smo407495 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 Archaeplastida
Solyc03g058890.4.1 No alias pectate lyase 0.03 Archaeplastida
Solyc03g071570.3.1 No alias pectate lyase 0.04 Archaeplastida
Solyc03g111690.4.1 No alias pectate lyase 0.02 Archaeplastida
Solyc05g014000.4.1 No alias pectate lyase 0.03 Archaeplastida
Solyc09g008380.3.1 No alias pectate lyase 0.03 Archaeplastida
Zm00001e004654_P002 No alias pectate lyase 0.18 Archaeplastida
Zm00001e029999_P001 No alias pectate lyase 0.02 Archaeplastida
AMTR_s00039p00189000 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.04 LandPlants
AMTR_s00120p00111300 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.07 LandPlants
AT1G04680 No alias Pectin lyase-like superfamily protein 0.02 LandPlants
AT3G27400 No alias Pectin lyase-like superfamily protein 0.03 LandPlants
AT3G53190 No alias Pectin lyase-like superfamily protein 0.07 LandPlants
GSVIVT01003984001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 LandPlants
GSVIVT01016208001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 LandPlants
Gb_02248 No alias pectate lyase 0.03 LandPlants
Gb_26755 No alias pectate lyase 0.03 LandPlants
LOC_Os04g05050.1 No alias pectate lyase 0.05 LandPlants
MA_10430145g0030 No alias pectate lyase 0.05 LandPlants
MA_10437227g0030 No alias pectate lyase 0.02 LandPlants
Mp3g01000.1 No alias pectate lyase 0.02 LandPlants
Pp3c17_16370V3.1 No alias Pectin lyase-like superfamily protein 0.01 LandPlants
Pp3c1_33130V3.1 No alias Pectin lyase-like superfamily protein 0.03 LandPlants
Pp3c1_4040V3.1 No alias Pectin lyase-like superfamily protein 0.02 LandPlants
Smo407495 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 LandPlants
Solyc03g071570.3.1 No alias pectate lyase 0.03 LandPlants
Solyc05g014000.4.1 No alias pectate lyase 0.02 LandPlants
Solyc09g008380.3.1 No alias pectate lyase 0.03 LandPlants
Zm00001e004654_P002 No alias pectate lyase 0.16 LandPlants
Zm00001e029999_P001 No alias pectate lyase 0.02 LandPlants
Zm00001e040624_P001 No alias pectate lyase 0.02 LandPlants
AMTR_s00039p00189000 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 SeedPlants
AMTR_s00120p00111300 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.05 SeedPlants
AT3G07010 No alias Pectin lyase-like superfamily protein 0.02 SeedPlants
AT3G53190 No alias Pectin lyase-like superfamily protein 0.06 SeedPlants
AT5G48900 No alias Pectin lyase-like superfamily protein 0.02 SeedPlants
GSVIVT01003984001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 SeedPlants
GSVIVT01016208001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 SeedPlants
Gb_02248 No alias pectate lyase 0.01 SeedPlants
Gb_26755 No alias pectate lyase 0.03 SeedPlants
LOC_Os04g05050.1 No alias pectate lyase 0.04 SeedPlants
MA_10430145g0030 No alias pectate lyase 0.04 SeedPlants
MA_10437227g0010 No alias pectate lyase 0.01 SeedPlants
Solyc03g071570.3.1 No alias pectate lyase 0.02 SeedPlants
Solyc09g008380.3.1 No alias pectate lyase 0.03 SeedPlants
Zm00001e004654_P002 No alias pectate lyase 0.13 SeedPlants
Zm00001e029999_P001 No alias pectate lyase 0.02 SeedPlants
Zm00001e040624_P001 No alias pectate lyase 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002022 Pec_lyase 157 338
No external refs found!