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  5. Ppi_g01412

Ppi_g01412 (RNEE/G)


Aliases : RNEE/G

Description : endoribonuclease *(RNase E) & original description: none


Gene families : OG0005953 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005953_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g01412

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00182640 RNEE/G,... RNA processing.organelle machineries.ribonuclease... 0.02 OrthoFinder output from all 47 species
Adi_g013921 RNEE/G endoribonuclease *(RNase E) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g41517 RNEE/G endoribonuclease *(RNase E) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.10G007300.1 RNEE/G, Ceric.10G007300 endoribonuclease *(RNase E) & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g48453 RNEE/G endoribonuclease *(RNase E) & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os08g23430.1 RNEE/G, LOC_Os08g23430 endoribonuclease (RNase E) 0.02 OrthoFinder output from all 47 species
Len_g30159 RNEE/G endoribonuclease *(RNase E) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g09430 RNEE/G endoribonuclease *(RNase E) & original description: none 0.03 OrthoFinder output from all 47 species
Mp7g15630.1 RNEE/G endoribonuclease (RNase E) 0.02 OrthoFinder output from all 47 species
Nbi_g38545 RNEE/G endoribonuclease *(RNase E) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26698 No alias endoribonuclease *(RNase E) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g083140.3.1 RNEE/G, Solyc02g083140 endoribonuclease (RNase E) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:2001070 starch binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006528 asparagine metabolic process IEP HCCA
BP GO:0006529 asparagine biosynthetic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR019307 RNA-bd_AU-1/RNase_E/G 1003 1281
IPR002044 CBM_fam20 504 592
No external refs found!