LOC_Os10g28600.1


Description : Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana (sp|q9sz52|pp344_arath : 1080.0)


Gene families : OG_01_0008852 (Archaeplastida) Phylogenetic Tree(s): OG_01_0008852_tree ,
OG_02_0008546 (LandPlants) Phylogenetic Tree(s): OG_02_0008546_tree ,
OG_03_0005697 (SeedPlants) Phylogenetic Tree(s): OG_03_0005697_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g28600.1
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AT4G31850 PGR3 proton gradient regulation 3 0.05 Archaeplastida
GSVIVT01035975001 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.04 Archaeplastida
Gb_22724 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.03 Archaeplastida
Gb_33624 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.04 Archaeplastida
Solyc04g015440.4.1 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.04 Archaeplastida
Zm00001e038060_P001 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.06 Archaeplastida
AMTR_s00019p00039970 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g31850,... 0.04 LandPlants
AT4G31850 PGR3 proton gradient regulation 3 0.05 LandPlants
GSVIVT01035975001 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.05 LandPlants
Gb_22724 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.03 LandPlants
Gb_33624 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.04 LandPlants
Solyc04g015440.4.1 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.03 LandPlants
Zm00001e038060_P001 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.06 LandPlants
AMTR_s00019p00039970 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g31850,... 0.02 SeedPlants
AT4G31850 PGR3 proton gradient regulation 3 0.05 SeedPlants
GSVIVT01035975001 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.05 SeedPlants
Gb_22724 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.03 SeedPlants
Gb_33624 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.04 SeedPlants
Solyc04g015440.4.1 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.03 SeedPlants
Zm00001e038060_P001 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.06 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 217 275
IPR002885 Pentatricopeptide_repeat 287 330
IPR002885 Pentatricopeptide_repeat 151 208
IPR002885 Pentatricopeptide_repeat 411 436
IPR002885 Pentatricopeptide_repeat 334 379
IPR002885 Pentatricopeptide_repeat 578 627
IPR002885 Pentatricopeptide_repeat 508 556
IPR002885 Pentatricopeptide_repeat 757 801
IPR002885 Pentatricopeptide_repeat 963 1008
IPR002885 Pentatricopeptide_repeat 826 872
IPR002885 Pentatricopeptide_repeat 896 942
IPR002885 Pentatricopeptide_repeat 1033 1073
IPR002885 Pentatricopeptide_repeat 438 486
No external refs found!