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  5. AMTR_s05659p00000220

AMTR_s05659p00000220 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold05659.1

No description available


Gene families : OG0003824 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003824_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s05659p00000220
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AMTR_s05659p00002430 evm_27.TU.AmTr_v1... Cytochrome c oxidase subunit 2 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
ATMG00160 COX2 cytochrome oxidase 2 0.08 OrthoFinder output from all 47 species
ATMG01280 ORF291 Cytochrome C oxidase subunit II-like, transmembrane domain 0.08 OrthoFinder output from all 47 species
Ceric.1Z125800.1 Ceric.1Z125800 not classified & original description: pacid=50604566... 0.1 OrthoFinder output from all 47 species
Ceric.1Z126200.1 COX2, Ceric.1Z126200 not classified & original description: pacid=50604572... 0.04 OrthoFinder output from all 47 species
Ceric.1Z257900.1 COX2, Ceric.1Z257900 not classified & original description: pacid=50586471... 0.05 OrthoFinder output from all 47 species
Ceric.1Z261900.1 COX2, Ceric.1Z261900 not classified & original description: pacid=50628405... 0.06 OrthoFinder output from all 47 species
Ceric.1Z314100.1 Ceric.1Z314100 not classified & original description: pacid=50567672... 0.1 OrthoFinder output from all 47 species
Ceric.1Z318500.1 Ceric.1Z318500 not classified & original description: pacid=50579280... 0.1 OrthoFinder output from all 47 species
Cre01.g049500 COX2 Cytochrome c oxidase subunit 2 OS=Oenothera berteroana 0.01 OrthoFinder output from all 47 species
Cre03.g154350 COX2 Cytochrome c oxidase subunit 2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01006909001 COX2 Cytochrome c oxidase subunit 2 OS=Glycine max 0.05 OrthoFinder output from all 47 species
Gb_08948 COX2 Cytochrome c oxidase subunit 2 OS=Beta vulgaris... 0.06 OrthoFinder output from all 47 species
Gb_26512 COX2 Cytochrome c oxidase subunit 2 OS=Glycine max... 0.03 OrthoFinder output from all 47 species
Gb_34804 No alias Cytochrome c oxidase subunit 2 OS=Glycine max... 0.05 OrthoFinder output from all 47 species
MA_10435550g0020 COX2 Cytochrome c oxidase subunit 2 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
MA_10436044g0020 COX2 Cytochrome c oxidase subunit 2 OS=Beta vulgaris... 0.03 OrthoFinder output from all 47 species
Mp4g18480.1 No alias Cytochrome c oxidase subunit 2 OS=Marchantia polymorpha... 0.04 OrthoFinder output from all 47 species
Nbi_g26482 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Solyc00g500101.1.1 COX2, Solyc00g500101 Cytochrome c oxidase subunit 2 OS=Beta vulgaris... 0.04 OrthoFinder output from all 47 species
Solyc00g500118.1.1 COX2, Solyc00g500118 Cytochrome c oxidase subunit 2 OS=Beta vulgaris... 0.04 OrthoFinder output from all 47 species
Solyc00g500244.1.1 COX2, Solyc00g500244 Cytochrome c oxidase subunit 2 OS=Beta vulgaris... 0.04 OrthoFinder output from all 47 species
Solyc00g500275.1.1 COX2, Solyc00g500275 Cytochrome c oxidase subunit 2 OS=Beta vulgaris... 0.04 OrthoFinder output from all 47 species
Solyc00g500359.1.1 COX2, Solyc00g500359 Cytochrome c oxidase subunit 2 OS=Beta vulgaris... 0.04 OrthoFinder output from all 47 species
Solyc03g063780.1.1 RPL16, Solyc03g063780 60S ribosomal protein L16, mitochondrial OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g21715 COX2 not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003954 NADH dehydrogenase activity IEP HCCA
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
BP GO:0009772 photosynthetic electron transport in photosystem II IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!