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  5. AMTR_s02071p00004290

AMTR_s02071p00004290 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold02071.2

Description : 30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa


Gene families : OG0008286 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008286_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s02071p00004290

Target Alias Description ECC score Gene Family Method Actions
Aev_g16236 No alias component *(uS12m) of small mitoribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Aob_g13504 No alias component *(uS12m) of small mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Cba_g12837 No alias component *(uS12m) of small mitoribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ceric.18G054400.1 Ceric.18G054400 not classified & original description: pacid=50621895... 0.02 OrthoFinder output from all 47 species
Sam_g26624 No alias component *(uS12m) of small mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Solyc00g500254.1.1 RPL20, Solyc00g500254 50S ribosomal protein L20, chloroplastic OS=Coffea... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular anatomical structure IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR006032 Ribosomal_S12/S23 45 137
No external refs found!