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  5. AMTR_s01922p00004790

AMTR_s01922p00004790 (DDM2, MET1, DMT01,...)


Aliases : DDM2, MET1, DMT01, MET2, DMT1, METI, evm_27.TU.AmTr_v1.0_scaffold01922.1

Description : DNA (cytosine-5)-methyltransferase 1B OS=Oryza sativa subsp. japonica


Gene families : OG0010539 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0010539_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s01922p00004790
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00095710 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AMTR_s00040p00218960 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00040p00219400 DMT02, DMT2,... DNA (cytosine-5)-methyltransferase 4 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00040p00220090 evm_27.TU.AmTr_v1... DNA (cytosine-5)-methyltransferase 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00040p00220690 evm_27.TU.AmTr_v1... DNA (cytosine-5)-methyltransferase 2 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00040p00221100 DDM2, MET1,... DNA (cytosine-5)-methyltransferase 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00040p00221850 evm_27.TU.AmTr_v1... DNA (cytosine-5)-methyltransferase 1B OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
AMTR_s00040p00221930 evm_27.TU.AmTr_v1... DNA (cytosine-5)-methyltransferase 1B OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001025 BAH_dom 737 824
IPR022702 Cytosine_MeTrfase1_RFD 325 447
IPR022702 Cytosine_MeTrfase1_RFD 23 147
No external refs found!