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  5. AMTR_s01571p00001870

AMTR_s01571p00001870 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold01571.1

Description : Probable calcium-binding protein CML43 OS=Arabidopsis thaliana


Gene families : OG0000205 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000205_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s01571p00001870
Cluster HCCA: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00239p00012930 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AT5G44460 CML43 calmodulin like 43 0.03 OrthoFinder output from all 47 species
Aev_g08071 CML43 calcium sensor *(CML) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g43266 UNE14 calcium sensor *(CML) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g24593 CML43 calcium sensor *(CML) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g70312 UNE14 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34646.t1 CML42, Aspi01Gene34646 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34647.t1 CML42, Aspi01Gene34647 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34651.t1 CML42, Aspi01Gene34651 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34653.t1 CML42, Aspi01Gene34653 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene57526.t1 CML43, Aspi01Gene57526 calcium sensor *(CML) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.17G067000.1 Ceric.17G067000 not classified & original description: pacid=50618804... 0.03 OrthoFinder output from all 47 species
Ceric.35G008900.1 CML42, Ceric.35G008900 calcium sensor *(CML) & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g04202 UNE14 calcium sensor *(CML) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g09200 UNE14 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g18813 UNE14 calcium sensor *(CML) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g37155 UNE14 calcium sensor *(CML) & original description: none 0.02 OrthoFinder output from all 47 species
Gb_09082 UNE14 Calmodulin-like protein 5 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Gb_28443 UNE14 Calmodulin-like protein 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os02g39380.1 AGD11, LOC_Os02g39380 Probable calcium-binding protein CML17 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
LOC_Os08g04890.1 CML42, LOC_Os08g04890 Probable calcium-binding protein CML32 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
MA_103558g0010 UNE14 Calcium-binding protein CML42 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_269415g0010 AGD11 Calmodulin-like protein 5 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_393053g0010 CML41 Calmodulin-like protein 5 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_8749g0010 CML43 Calcium-binding protein CML42 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp6g20470.1 UNE14 Probable calcium-binding protein CML22 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Pir_g07967 UNE14 calcium sensor *(CML) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g08285 UNE14 calcium sensor *(CML) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc04g058160.2.1 Solyc04g058160 Probable calcium-binding protein CML44 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc04g058170.1.1 Solyc04g058170 Probable calcium-binding protein CML44 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g03807 UNE14 calcium sensor *(CML) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g25390 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP HCCA
BP GO:0006528 asparagine metabolic process IEP HCCA
BP GO:0006529 asparagine biosynthetic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR011992 EF-hand-dom_pair 67 129
No external refs found!