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  5. AMTR_s00612p00010480

AMTR_s00612p00010480 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00612.2

Description : RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor


Gene families : OG0000165 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000165_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: AMTR_s00612p00010480

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00084p00087230 PTAC15,... RNA biosynthesis.organelle... 0.06 OrthoFinder output from all 47 species
Aev_g19152 No alias mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g24025 No alias mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g12390 No alias mTERF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Gb_07257 PTAC15 TAC15 cofactor of plastid-encoded RNA polymerase.... 0.02 OrthoFinder output from all 47 species
Gb_13847 PTAC15 TAC15 cofactor of plastid-encoded RNA polymerase.... 0.02 OrthoFinder output from all 47 species
Gb_15878 No alias transcription factor (mTERF) 0.03 OrthoFinder output from all 47 species
Gb_26213 No alias transcription factor (mTERF) 0.03 OrthoFinder output from all 47 species
Gb_31439 No alias transcription factor (mTERF) 0.02 OrthoFinder output from all 47 species
LOC_Os11g10040.1 LOC_Os11g10040 transcription factor (mTERF) 0.02 OrthoFinder output from all 47 species
MA_140519g0010 No alias transcription factor (mTERF) 0.02 OrthoFinder output from all 47 species
MA_278493g0010 No alias transcription factor (mTERF) 0.02 OrthoFinder output from all 47 species
Solyc02g082010.3.1 Solyc02g082010 transcription factor (mTERF) 0.03 OrthoFinder output from all 47 species
Solyc04g072550.3.1 Solyc04g072550 transcription factor (mTERF) 0.03 OrthoFinder output from all 47 species
Zm00001e031638_P001 Zm00001e031638 transcription factor (mTERF) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
CC GO:0000151 ubiquitin ligase complex IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016833 oxo-acid-lyase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
InterPro domains Description Start Stop
IPR003690 MTERF 96 288
No external refs found!