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  5. AMTR_s00543p00002030

AMTR_s00543p00002030 (RPL2.1,...)


Aliases : RPL2.1, evm_27.TU.AmTr_v1.0_scaffold00543.1

Description : 50S ribosomal protein L2, chloroplastic OS=Solanum lycopersicum


Gene families : OG0002194 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002194_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00543p00002030
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
ATCG00830 RPL2.1 ribosomal protein L2 0.02 OrthoFinder output from all 47 species
ATCG01310 RPL2.2 ribosomal protein L2 0.02 OrthoFinder output from all 47 species
Aev_g14432 RPL2.1 component *(uL2c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Aev_g24286 No alias component *(uL2m) of large mitoribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Aop_g61267 No alias component *(uL2m) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Cba_g03784 No alias component *(uL2m) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Ceric.1Z164200.1 RPL2.1, Ceric.1Z164200 not classified & original description: pacid=50596959... 0.02 OrthoFinder output from all 47 species
Dde_g21793 RPL2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43250 RPL2.1 component *(uL2c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular anatomical structure IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004129 cytochrome-c oxidase activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009060 aerobic respiration IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0015980 energy derivation by oxidation of organic compounds IEP HCCA
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
CC GO:0031361 obsolete integral component of thylakoid membrane IEP HCCA
BP GO:0045333 cellular respiration IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
InterPro domains Description Start Stop
IPR022669 Ribosomal_L2_C 1 119
No external refs found!