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  5. AMTR_s00423p00011960

AMTR_s00423p00011960 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00423.1

Description : 5-3 exoribonuclease 3 OS=Arabidopsis thaliana


Gene families : OG0000769 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000769_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: AMTR_s00423p00011960

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00204p00040220 evm_27.TU.AmTr_v1... 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Aev_g17886 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.07G019600.1 XRN3, AtXRN3,... not classified & original description: pacid=50626131... 0.04 OrthoFinder output from all 47 species
Cre08.g373916 XRN2, AtXRN2 5-3 exoribonuclease 2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g23449 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17362 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g03203 XRN2, AtXRN2 not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004527 exonuclease activity IEA Interproscan
CC GO:0005622 intracellular anatomical structure IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003964 RNA-directed DNA polymerase activity IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0004565 beta-galactosidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
CC GO:0009341 beta-galactosidase complex IEP HCCA
MF GO:0015925 galactosidase activity IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR004859 Xrn1_N 1 67
No external refs found!