AMTR_s00248p00017710 (AXR6, ATCUL1, CUL1,...)

Aliases : AXR6, ATCUL1, CUL1, evm_27.TU.AmTr_v1.0_scaffold00248.4

Description : Cullin-1 OS=Arabidopsis thaliana

Gene families : OG0001888 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001888_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00248p00017710

Target	Alias	Description	ECC score	Gene Family Method
MA_83109g0010	AXR6, ATCUL1, CUL1	Cullin-1 OS=Arabidopsis thaliana (sp\|q94ah6\|cul1_arath : 306.0)	0.02	OrthoFinder output from all 47 species
Pir_g01372	AXR6, ATCUL1, CUL1	scaffold component *(CUL1) of SCF E3 ubiquitin ligase...	0.02	OrthoFinder output from all 47 species
Pnu_g20586	AXR6, ATCUL1, CUL1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015031	AXR6, ATCUL1, CUL1	scaffold component *(CUL1) of SCF E3 ubiquitin ligase...	0.02	OrthoFinder output from all 47 species
Solyc01g067230.4.1	AXR6, ATCUL1,...	Cullin-1 OS=Arabidopsis thaliana (sp\|q94ah6\|cul1_arath : 86.7)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEA	Interproscan
MF	GO:0031625	ubiquitin protein ligase binding	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
MF	GO:0044389	ubiquitin-like protein ligase binding	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001373	Cullin_N	5	119

External Links

No external refs found!

AMTR_s00248p00017710 (AXR6, ATCUL1, CUL1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation