1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00247p00011460

AMTR_s00247p00011460 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00247.2

Description : Protein biosynthesis.translation initiation.eIF5B Met-tRNA positioning factor


Gene families : OG0003112 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003112_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00247p00011460

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00064p00039620 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
Aev_g37468 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.03 OrthoFinder output from all 47 species
Aop_g09056 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g25106 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.04 OrthoFinder output from all 47 species
Ehy_g14997 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.03 OrthoFinder output from all 47 species
Len_g30258 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.02 OrthoFinder output from all 47 species
Msp_g13519 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.03 OrthoFinder output from all 47 species
Ore_g16364 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g33223 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.03 OrthoFinder output from all 47 species
Pp3c26_12510V3.1 Pp3c26_12510 eukaryotic translation initiation factor 2 (eIF-2) family protein 0.02 OrthoFinder output from all 47 species
Sam_g25594 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.03 OrthoFinder output from all 47 species
Spa_g56625 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005618 cell wall IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006536 glutamate metabolic process IEP HCCA
BP GO:0006537 glutamate biosynthetic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
MF GO:0015930 glutamate synthase activity IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0043650 dicarboxylic acid biosynthetic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004161 EFTu-like_2 323 365
IPR000795 T_Tr_GTP-bd_dom 88 295
No external refs found!