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  5. AMTR_s00224p00009210

AMTR_s00224p00009210 (TCP4, MEE35,...)


Aliases : TCP4, MEE35, evm_27.TU.AmTr_v1.0_scaffold00224.2

Description : RNA biosynthesis.transcriptional activation.TCP transcription factor


Gene families : OG0000529 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000529_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00224p00009210
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
Aev_g07745 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01020666001 TCP4, MEE35 RNA biosynthesis.transcriptional activation.TCP... 0.02 OrthoFinder output from all 47 species
MA_86651g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Solyc10g082063.1.1 TCP13, TFPD,... transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Solyc12g014140.3.1 TCP4, MEE35,... transcription factor (TCP) 0.02 OrthoFinder output from all 47 species
Zm00001e005909_P001 TCP2, Zm00001e005909 transcription factor (TCP) 0.02 OrthoFinder output from all 47 species
Zm00001e011911_P001 ATTCP24, TCP24,... transcription factor (TCP) 0.02 OrthoFinder output from all 47 species
Zm00001e034097_P001 BRC1, ATTCP18,... transcription factor (TCP) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP HCCA
MF GO:0005342 organic acid transmembrane transporter activity IEP HCCA
MF GO:0005542 folic acid binding IEP HCCA
MF GO:0008509 monoatomic anion transmembrane transporter activity IEP HCCA
MF GO:0008514 organic anion transmembrane transporter activity IEP HCCA
MF GO:0008517 folic acid transmembrane transporter activity IEP HCCA
MF GO:0008518 folate:monoatomic anion antiporter activity IEP HCCA
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
MF GO:0031406 carboxylic acid binding IEP HCCA
MF GO:0033218 amide binding IEP HCCA
MF GO:0042887 amide transmembrane transporter activity IEP HCCA
MF GO:0043177 organic acid binding IEP HCCA
MF GO:0046943 carboxylic acid transmembrane transporter activity IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
MF GO:0072341 modified amino acid binding IEP HCCA
MF GO:0072349 modified amino acid transmembrane transporter activity IEP HCCA
MF GO:0090482 vitamin transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR005333 Transcription_factor_TCP 48 135
No external refs found!