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  5. AMTR_s00210p00017530

AMTR_s00210p00017530 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00210.3

Description : Pentatricopeptide repeat-containing protein At5g18390, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00210p00017530

Target Alias Description ECC score Gene Family Method Actions
Ala_g06052 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g12655 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp1g09820.1 No alias Pentatricopeptide repeat-containing protein At3g16010... 0.03 OrthoFinder output from all 47 species
Mp2g09100.1 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
CC GO:0000922 spindle pole IEP HCCA
CC GO:0005815 microtubule organizing center IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 324 352
IPR002885 Pentatricopeptide_repeat 149 178
IPR002885 Pentatricopeptide_repeat 360 404
IPR002885 Pentatricopeptide_repeat 258 299
IPR002885 Pentatricopeptide_repeat 184 229
No external refs found!