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  5. AMTR_s00201p00015360

AMTR_s00201p00015360 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00201.4

Description : Cold shock protein 1 OS=Arabidopsis thaliana


Gene families : OG0002687 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002687_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00201p00015360

Target Alias Description ECC score Gene Family Method Actions
Adi_g017565 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g088448 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g00771 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g44542 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03541 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_35329 No alias Cold shock protein 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os10g39820.1 LOC_Os10g39820 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g19599 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g31025 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g35381 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02273 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g31680 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc10g054330.3.1 Solyc10g054330 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g05865 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g04351 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0007264 small GTPase mediated signal transduction IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 140 156
IPR001878 Znf_CCHC 178 192
IPR001878 Znf_CCHC 76 91
IPR001878 Znf_CCHC 102 118
IPR001878 Znf_CCHC 121 136
IPR001878 Znf_CCHC 197 213
IPR001878 Znf_CCHC 20 35
IPR001878 Znf_CCHC 57 72
IPR001878 Znf_CCHC 38 54
No external refs found!