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  5. AMTR_s00197p00028970

AMTR_s00197p00028970 (GAMMA-H2AX, H2AXB,...)


Aliases : GAMMA-H2AX, H2AXB, HTA3, G-H2AX, evm_27.TU.AmTr_v1.0_scaffold00197.10

Description : Chromatin organisation.histones.H2A-type histone


Gene families : OG0000117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000117_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: AMTR_s00197p00028970

Target Alias Description ECC score Gene Family Method Actions
Adi_g005118 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0005.g009474 GAMMA-H2AX,... histone *(H2A) & original description: CDS=131-538 0.04 OrthoFinder output from all 47 species
Cba_g08811 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001085.4 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.01 OrthoFinder output from all 47 species
Dac_g02988 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g50952 GAMMA-H2AX,... histone *(H2A) & original description: none 0.08 OrthoFinder output from all 47 species
GSVIVT01025019001 HTA12 Chromatin organisation.histones.H2A-type histone 0.04 OrthoFinder output from all 47 species
Gb_25326 GAMMA-H2AX,... histone (H2A) 0.03 OrthoFinder output from all 47 species
Smo166626 RAT5, HTA1, ATHTA1 Chromatin organisation.histones.H2A-type histone 0.05 OrthoFinder output from all 47 species
Smo170948 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.09 OrthoFinder output from all 47 species
Smo73637 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.04 OrthoFinder output from all 47 species
Zm00001e005512_P001 GAMMA-H2AX,... histone (H2A) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEP HCCA
MF GO:0004866 endopeptidase inhibitor activity IEP HCCA
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030414 peptidase inhibitor activity IEP HCCA
MF GO:0061134 peptidase regulator activity IEP HCCA
MF GO:0061135 endopeptidase regulator activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 23 96
No external refs found!