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  5. AMTR_s00184p00043710

AMTR_s00184p00043710 (AS2,...)


Aliases : AS2, evm_27.TU.AmTr_v1.0_scaffold00184.19

Description : RNA biosynthesis.transcriptional activation.AS2/LOB transcription factor


Gene families : OG0000114 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000114_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00184p00043710
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
AT2G42440 No alias Lateral organ boundaries (LOB) domain family protein 0.03 OrthoFinder output from all 47 species
Ala_g27571 LBD4 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g24489 LOB AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_86300g0010 LBD16, ASL18 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Msp_g09789 LOB AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g095940.1.1 LBD21, Solyc03g095940 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000247 C-8 sterol isomerase activity IEP HCCA
MF GO:0003779 actin binding IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006694 steroid biosynthetic process IEP HCCA
BP GO:0006696 ergosterol biosynthetic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008202 steroid metabolic process IEP HCCA
BP GO:0008204 ergosterol metabolic process IEP HCCA
BP GO:0016125 sterol metabolic process IEP HCCA
BP GO:0016126 sterol biosynthetic process IEP HCCA
BP GO:0016128 phytosteroid metabolic process IEP HCCA
BP GO:0016129 phytosteroid biosynthetic process IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016863 intramolecular oxidoreductase activity, transposing C=C bonds IEP HCCA
BP GO:0030029 actin filament-based process IEP HCCA
BP GO:0030036 actin cytoskeleton organization IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044107 cellular alcohol metabolic process IEP HCCA
BP GO:0044108 cellular alcohol biosynthetic process IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
BP GO:0097384 cellular lipid biosynthetic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
BP GO:1902652 secondary alcohol metabolic process IEP HCCA
BP GO:1902653 secondary alcohol biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004883 LOB 4 100
No external refs found!