Zm00001d025048 (GRMZM2G159330)


Aliases : GRMZM2G159330

Description : 27.3.55 RNA.regulation of transcription.HDA Encodes a WD-40 protein involved in histone deacetylation in response to abiotic stress.Identified in a screen for mutations with altered expression of stress induced genes. Functions as a repressor of cold tolerance induced genes. Loss of function mutants are hypersensitive to freezing. high expression of osmotically responsive genes 15 (HOS15)


Gene families : OG_01_0001588 (Gene family) Phylogenetic Tree(s): OG0001588_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d025048
Cluster HCCA cluster: Cluster_286

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021680.25 No alias 20.2.2 stress.abiotic.cold Encodes a WD-40 protein... 0.02 Gene family
Cre12.g527500 No alias 27.3.55 RNA.regulation of transcription.HDA Encodes a... 0.02 Gene family
GSVIVT01000179001 No alias 27.3.55 RNA.regulation of transcription.HDA Encodes a... 0.03 Gene family
LOC_Os07g22220 Os07g0405100 27.3.55 RNA.regulation of transcription.HDA Encodes a... 0.04 Gene family
MA_57003g0010 No alias 20.2.2 stress.abiotic.cold Encodes a WD-40 protein... 0.03 Gene family
Smo90375 PACid_15411895 20.2.2 stress.abiotic.cold Encodes a WD-40 protein... 0.02 Gene family
Solyc04g078320.3.1 Solyc04g078320.3 20.2.2 stress.abiotic.cold Encodes a WD-40 protein... 0.05 Gene family

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001680 WD40_repeat 289 326
IPR001680 WD40_repeat 15 49
IPR001680 WD40_repeat 117 150
IPR001680 WD40_repeat 70 109
IPR001680 WD40_repeat 196 233
IPR001680 WD40_repeat 238 283
No external refs found!