AMTR_s00175p00057810 (CSB3, CLB4, GCPE,...)

Aliases : CSB3, CLB4, GCPE, HDS, ISPG, evm_27.TU.AmTr_v1.0_scaffold00175.30

Description : Secondary metabolism.terpenoids.methylerythritol phosphate pathway.4-hydroxy-3-methylbut-2-enyl diphosphate synthase

Gene families : OG0004404 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004404_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00175p00057810
Cluster	HCCA: Cluster_101

Target	Alias	Description	ECC score	Gene Family Method
AT5G60600	CSB3, CLB4,...	4-hydroxy-3-methylbut-2-enyl diphosphate synthase	0.06	OrthoFinder output from all 47 species
Aop_g14403	CSB3, CLB4,...	4-hydroxy-3-methylbut-2-enyl diphosphate synthase &...	0.05	OrthoFinder output from all 47 species
Cba_g71707	CSB3, CLB4,...	4-hydroxy-3-methylbut-2-enyl diphosphate synthase &...	0.03	OrthoFinder output from all 47 species
Ceric.17G077300.1	CSB3, CLB4,...	4-hydroxy-3-methylbut-2-enyl diphosphate synthase &...	0.02	OrthoFinder output from all 47 species
Cre12.g490350	CSB3, CLB4,...	Secondary metabolism.terpenoids.methylerythritol...	0.03	OrthoFinder output from all 47 species
Gb_01895	CSB3, CLB4,...	4-hydroxy-3-methylbut-2-enyl diphosphate synthase	0.04	OrthoFinder output from all 47 species
LOC_Os02g39160.1	CSB3, CLB4,...	4-hydroxy-3-methylbut-2-enyl diphosphate synthase	0.03	OrthoFinder output from all 47 species
Len_g16087	CSB3, CLB4,...	4-hydroxy-3-methylbut-2-enyl diphosphate synthase &...	0.04	OrthoFinder output from all 47 species
Lfl_g05647	CSB3, CLB4,...	4-hydroxy-3-methylbut-2-enyl diphosphate synthase &...	0.04	OrthoFinder output from all 47 species
Mp5g09870.1	CSB3, CLB4,...	4-hydroxy-3-methylbut-2-enyl diphosphate synthase	0.04	OrthoFinder output from all 47 species
Pir_g09734	CSB3, CLB4,...	4-hydroxy-3-methylbut-2-enyl diphosphate synthase &...	0.02	OrthoFinder output from all 47 species
Smo149035	CSB3, CLB4,...	Secondary metabolism.terpenoids.methylerythritol...	0.03	OrthoFinder output from all 47 species
Solyc11g069380.2.1	CSB3, CLB4,...	4-hydroxy-3-methylbut-2-enyl diphosphate synthase	0.04	OrthoFinder output from all 47 species
Tin_g02819	CSB3, CLB4,...	4-hydroxy-3-methylbut-2-enyl diphosphate synthase &...	0.03	OrthoFinder output from all 47 species
Zm00001e015046_P001	CSB3, CLB4,...	4-hydroxy-3-methylbut-2-enyl diphosphate synthase	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006720	isoprenoid metabolic process	None	Extended
BP	GO:0006721	terpenoid metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008299	isoprenoid biosynthetic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016114	terpenoid biosynthetic process	IEA	Interproscan
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
MF	GO:0046429	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	IEA	Interproscan
MF	GO:0052592	oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor	None	Extended
BP	GO:0055114	obsolete oxidation-reduction process	IEA	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	HCCA
BP	GO:0006081	cellular aldehyde metabolic process	IEP	HCCA
BP	GO:0006090	pyruvate metabolic process	IEP	HCCA
BP	GO:0006470	protein dephosphorylation	IEP	HCCA
BP	GO:0006644	phospholipid metabolic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	HCCA
BP	GO:0008654	phospholipid biosynthetic process	IEP	HCCA
BP	GO:0009240	isopentenyl diphosphate biosynthetic process	IEP	HCCA
MF	GO:0009975	cyclase activity	IEP	HCCA
MF	GO:0009976	tocopherol cyclase activity	IEP	HCCA
BP	GO:0016311	dephosphorylation	IEP	HCCA
MF	GO:0016791	phosphatase activity	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
MF	GO:0016881	acid-amino acid ligase activity	IEP	HCCA
BP	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	IEP	HCCA
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	IEP	HCCA
MF	GO:0030247	polysaccharide binding	IEP	HCCA
MF	GO:0033926	glycopeptide alpha-N-acetylgalactosaminidase activity	IEP	HCCA
BP	GO:0046490	isopentenyl diphosphate metabolic process	IEP	HCCA
MF	GO:0050662	obsolete coenzyme binding	IEP	HCCA
BP	GO:0051258	protein polymerization	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
MF	GO:0140103	catalytic activity, acting on a glycoprotein	IEP	HCCA
MF	GO:2001070	starch binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004588	IspG_bac-typ	88	731

External Links

No external refs found!

AMTR_s00175p00057810 (CSB3, CLB4, GCPE,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation