AMTR_s00175p00051190 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00175.23

Description : RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor

Gene families : OG0005342 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005342_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00175p00051190

Target	Alias	Description	ECC score	Gene Family Method
Aop_g04617	No alias	EC_2.1 transferase transferring one-carbon group &...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020629.29	No alias	Enzyme classification.EC_2 transferases.EC_2.1...	0.01	OrthoFinder output from all 47 species
Ehy_g01559	No alias	EC_2.1 transferase transferring one-carbon group &...	0.02	OrthoFinder output from all 47 species
GSVIVT01025178001	No alias	RNA biosynthesis.transcriptional activation.C3H zinc...	0.06	OrthoFinder output from all 47 species
Gb_23411	No alias	C3H zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
LOC_Os04g01480.1	LOC_Os04g01480	C3H zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Lfl_g04204	No alias	EC_2.1 transferase transferring one-carbon group &...	0.03	OrthoFinder output from all 47 species
Mp5g00110.1	No alias	C3H zinc finger transcription factor	0.02	OrthoFinder output from all 47 species
Smo440228	No alias	RNA biosynthesis.transcriptional activation.C3H zinc...	0.02	OrthoFinder output from all 47 species
Solyc11g069340.2.1	Solyc11g069340	C3H zinc finger transcription factor	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	None	Extended
MF	GO:0008173	RNA methyltransferase activity	IEA	Interproscan
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000139	Golgi membrane	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0003909	DNA ligase activity	IEP	HCCA
MF	GO:0003910	DNA ligase (ATP) activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006906	vesicle fusion	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007030	Golgi organization	IEP	HCCA
BP	GO:0008219	cell death	IEP	HCCA
MF	GO:0008565	obsolete protein transporter activity	IEP	HCCA
BP	GO:0016050	vesicle organization	IEP	HCCA
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0048280	vesicle fusion with Golgi apparatus	IEP	HCCA
BP	GO:0048284	organelle fusion	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0061024	membrane organization	IEP	HCCA
BP	GO:0061025	membrane fusion	IEP	HCCA
BP	GO:0090174	organelle membrane fusion	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	164	226
IPR000571	Znf_CCCH	74	101
IPR025714	Methyltranfer_dom	587	654
IPR010280	U5_MeTrfase_fam	772	821

External Links

No external refs found!

AMTR_s00175p00051190 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation