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  5. AMTR_s00173p00012350

AMTR_s00173p00012350 (SYP32, ATSYP32,...)


Aliases : SYP32, ATSYP32, evm_27.TU.AmTr_v1.0_scaffold00173.2

Description : Vesicle trafficking.SNARE target membrane recognition and fusion complexes.Qa-type SNARE components.SYP3-group protein


Gene families : OG0002044 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002044_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00173p00012350
Cluster HCCA: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
Als_g03019 SYP32, ATSYP32 Qa-type SYP3-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
MA_57116g0010 ATSED5, SED5,... no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_9185616g0010 SYP32, ATSYP32 SYP3-group Qa-type SNARE component 0.02 OrthoFinder output from all 47 species
Msp_g02410 SYP32, ATSYP32 Qa-type SYP3-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
Ppi_g05114 SYP32, ATSYP32 Qa-type SYP3-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
Spa_g10120 SYP32, ATSYP32 Qa-type SYP3-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
InterPro domains Description Start Stop
IPR000727 T_SNARE_dom 266 323
IPR006011 Syntaxin_N 52 156
No external refs found!