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  5. LOC_Os10g25010.1

LOC_Os10g25010.1


Description : DNA repair protein (CEN2). centrin component CEN of TREX-2 mRNP trafficking complex


Gene families : OG_01_0000031 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000031_tree ,
OG_02_0002452 (LandPlants) Phylogenetic Tree(s): OG_02_0002452_tree ,
OG_03_0002735 (SeedPlants) Phylogenetic Tree(s): OG_03_0002735_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g25010.1
Cluster HCCA: Cluster_258

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00126p00123680 evm_27.TU.AmTr_v1... Calmodulin-like protein 1 OS=Arabidopsis thaliana 0.04 Archaeplastida
AT2G15680 No alias Calcium-binding EF-hand family protein 0.05 Archaeplastida
AT4G20780 CML42 calmodulin like 42 0.02 Archaeplastida
AT4G37010 CEN2 centrin 2 0.04 Archaeplastida
GSVIVT01018070001 No alias Calmodulin-like protein 11 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01025831001 No alias Calmodulin OS=Lilium longiflorum 0.05 Archaeplastida
Gb_08148 No alias Calmodulin OS=Solanum lycopersicum (sp|p27161|calm_sollc : 289.0) 0.03 Archaeplastida
Gb_13552 No alias Calmodulin OS=Solanum lycopersicum (sp|p27161|calm_sollc : 290.0) 0.02 Archaeplastida
Gb_13868 No alias Probable calcium-binding protein CML43 OS=Arabidopsis... 0.03 Archaeplastida
Gb_28443 No alias Calmodulin-like protein 2 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Gb_30178 No alias Calmodulin-like protein 6 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_30819 No alias Calmodulin-like protein 5 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os01g59530.1 No alias Calmodulin-like protein 1 OS=Oryza sativa subsp.... 0.04 Archaeplastida
LOC_Os12g04360.1 No alias Probable calcium-binding protein CML36 OS=Arabidopsis... 0.02 Archaeplastida
MA_10124165g0020 No alias Probable calcium-binding protein CML10 OS=Oryza sativa... 0.03 Archaeplastida
MA_1190858g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_13199g0010 No alias Probable calcium-binding protein CML27 OS=Oryza sativa... 0.02 Archaeplastida
MA_27386g0010 No alias Probable calcium-binding protein CML27 OS=Oryza sativa... 0.03 Archaeplastida
MA_52212g0010 No alias Probable calcium-binding protein CML10 OS=Oryza sativa... 0.02 Archaeplastida
Mp1g00920.1 No alias Calmodulin-related protein OS=Petunia hybrida... 0.03 Archaeplastida
Mp6g10070.1 No alias Calmodulin-like protein 5 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Mp6g20450.1 No alias Probable calcium-binding protein CML22 OS=Oryza sativa... 0.03 Archaeplastida
Pp3c14_8590V3.1 No alias calmodulin 5 0.02 Archaeplastida
Pp3c9_25180V3.1 No alias EF hand calcium-binding protein family 0.02 Archaeplastida
Solyc01g008950.4.1 No alias Calmodulin-related protein OS=Petunia hybrida... 0.02 Archaeplastida
Solyc03g118810.1.1 No alias Calcium-binding allergen Ole e 8 OS=Olea europaea... 0.02 Archaeplastida
Solyc05g050750.1.1 No alias Calmodulin-like protein 3 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e001501_P001 No alias Calmodulin-related protein OS=Petunia hybrida... 0.02 Archaeplastida
Zm00001e011787_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e012873_P001 No alias DNA repair protein (CEN2). centrin component CEN of... 0.04 Archaeplastida
Zm00001e027331_P001 No alias Calmodulin-related protein OS=Petunia hybrida... 0.03 Archaeplastida
Zm00001e031996_P001 No alias Calmodulin-related protein OS=Petunia hybrida... 0.02 Archaeplastida
Zm00001e038302_P001 No alias Calmodulin-related protein OS=Petunia hybrida... 0.02 Archaeplastida
Zm00001e012873_P001 No alias DNA repair protein (CEN2). centrin component CEN of... 0.03 LandPlants
Zm00001e012873_P001 No alias DNA repair protein (CEN2). centrin component CEN of... 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002048 EF_hand_dom 46 108
IPR002048 EF_hand_dom 119 182
No external refs found!