AMTR_s00169p00055880 (OBP4,...)

Aliases : OBP4, evm_27.TU.AmTr_v1.0_scaffold00169.34

Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.DOF transcription factor

Gene families : OG0000067 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000067_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00169p00055880
Cluster	HCCA: Cluster_111

Target	Alias	Description	ECC score	Gene Family Method
AT3G21270	ADOF2, DOF2	DOF zinc finger protein 2	0.03	OrthoFinder output from all 47 species
AT3G61850	DAG1	Dof-type zinc finger DNA-binding family protein	0.04	OrthoFinder output from all 47 species
AT5G60850	OBP4	OBF binding protein 4	0.03	OrthoFinder output from all 47 species
Adi_g024682	No alias	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g058001	OBP4	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g067547	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g086178	OBP4	transcription factor *(DOF) & original description: none	0.05	OrthoFinder output from all 47 species
Aev_g11998	TMO6	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g39679	CDF1	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g03761	TMO6	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g06838	DAG1	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g10827	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g27376	No alias	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g67430	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene26374.t1	Aspi01Gene26374	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene30375.t1	OBP4, Aspi01Gene30375	transcription factor *(DOF) & original description: none	0.06	OrthoFinder output from all 47 species
Azfi_s1074.g096912	TMO6	transcription factor *(DOF) & original description: CDS=1-1176	0.02	OrthoFinder output from all 47 species
Cba_g39110	No alias	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g31456	No alias	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g01245	CDF1	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g03345	OBP4	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g12722	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g13892	OBP1	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g16046	ADOF1, DOF1	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g26661	No alias	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g26839	CDF1	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01005057001	TMO6	RNA biosynthesis.transcriptional activation.C2C2...	0.03	OrthoFinder output from all 47 species
GSVIVT01016538001	OBP3	RNA biosynthesis.transcriptional activation.C2C2...	0.04	OrthoFinder output from all 47 species
Gb_07177	CDF2	transcription factor (DOF)	0.05	OrthoFinder output from all 47 species
Gb_28499	TMO6	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
LOC_Os04g47990.1	LOC_Os04g47990	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Lfl_g17744	No alias	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
MA_16692g0010	TMO6	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
MA_56828g0010	No alias	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
Msp_g32354	TMO6	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Msp_g45088	TMO6	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g02334	TMO6	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g19321	ADOF1, DOF1	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g38953	TMO6	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g06748	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g25217	OBP4	transcription factor *(DOF) & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g32789	CDF2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g01905	DOF2.4, ATDOF2.4	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g16291	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g32527	TMO6	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g05155	TMO6	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g06804	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007584	ADOF1, DOF1	transcription factor *(DOF) & original description: CDS=1-1335	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012351	ADOF1, DOF1	transcription factor *(DOF) & original description: CDS=1-1632	0.02	OrthoFinder output from all 47 species
Smo29617	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.02	OrthoFinder output from all 47 species
Solyc02g077960.3.1	TMO6, Solyc02g077960	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Solyc02g090220.3.1	OBP1, Solyc02g090220	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Solyc03g112930.3.1	HCA2, DOF5.6,...	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
Solyc04g070960.3.1	Solyc04g070960	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
Solyc06g076030.3.1	Solyc06g076030	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
Solyc08g082910.2.1	Solyc08g082910	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Solyc09g010680.3.1	Solyc09g010680	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
Solyc11g072500.2.1	TMO6, Solyc11g072500	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
Spa_g05594	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g54524	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g00696	TMO6	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g01918	OBP4	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e002951_P002	Zm00001e002951	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
Zm00001e006190_P001	Zm00001e006190	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
Zm00001e007228_P002	Zm00001e007228	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
Zm00001e010454_P001	TMO6, Zm00001e010454	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
Zm00001e015414_P004	Zm00001e015414	transcription factor (DOF)	0.05	OrthoFinder output from all 47 species
Zm00001e015597_P001	HCA2, DOF5.6,...	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
Zm00001e019172_P001	Zm00001e019172	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Zm00001e023218_P004	Zm00001e023218	transcription factor (DOF)	0.06	OrthoFinder output from all 47 species
Zm00001e023334_P001	HCA2, DOF5.6,...	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Zm00001e027634_P002	OBP3, Zm00001e027634	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016901	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor	IEP	HCCA
MF	GO:0048038	quinone binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	31	87

External Links

No external refs found!

AMTR_s00169p00055880 (OBP4,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation