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  5. AMTR_s00169p00047130

AMTR_s00169p00047130 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00169.29

No description available


Gene families : OG0001047 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001047_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00169p00047130

Target Alias Description ECC score Gene Family Method Actions
AT2G25970 No alias KH domain-containing protein 0.03 OrthoFinder output from all 47 species
Adi_g077319 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g088533 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g103366 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g105498 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02435 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g33204 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g08444 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g72516 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g72682 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g78248 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G027700.1 Ceric.03G027700 not classified & original description: pacid=50573278... 0.05 OrthoFinder output from all 47 species
Ceric.20G036400.1 Ceric.20G036400 not classified & original description: pacid=50567078... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020553.157 No alias Protein BTR1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre06.g250800 No alias No description available 0.03 OrthoFinder output from all 47 species
Dcu_g11627 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g11741 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g02873 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g03956 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06078 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g24459 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g02045 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g10191 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_10434164g0020 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_13061g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g17404 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g26146 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ore_g38566 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g06700 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g18992 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g19200 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g10281 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Solyc11g040370.2.1 Solyc11g040370 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Solyc12g095960.3.1 Solyc12g095960 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Tin_g01119 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g07129 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e014452_P001 Zm00001e014452 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e024927_P001 Zm00001e024927 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e029163_P001 Zm00001e029163 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005665 RNA polymerase II, core complex IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 128 192
IPR004088 KH_dom_type_1 223 288
No external refs found!