AMTR_s00168p00058210 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00168.21

Description : Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase activities.E-class RAB GTPase

Gene families : OG0000945 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000945_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00168p00058210

Target	Alias	Description	ECC score	Gene Family Method
Adi_g004291	ATRABE1D,...	E-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g30318	ATRABE1D,...	E-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Als_g54700	ATRABE1C,...	E-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g11562	ATRABE1E, ATRAB8E, RABE1e	E-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Cre15.g641800	ATRABE1D,...	GTP-binding protein yptV2 OS=Volvox carteri	0.03	OrthoFinder output from all 47 species
LOC_Os03g60530.1	ATRABE1C,...	E-class RAB GTPase	0.03	OrthoFinder output from all 47 species
LOC_Os07g13530.1	LOC_Os07g13530	E-class RAB GTPase	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000647	ATRABE1D,...	not classified & original description: CDS=1-615	0.02	OrthoFinder output from all 47 species
Sam_g39848	No alias	E-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007264	small GTPase mediated signal transduction	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
BP	GO:0016485	protein processing	IEP	HCCA
BP	GO:0043085	positive regulation of catalytic activity	IEP	HCCA
BP	GO:0044093	positive regulation of molecular function	IEP	HCCA
BP	GO:0050790	regulation of catalytic activity	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
BP	GO:0051604	protein maturation	IEP	HCCA
BP	GO:0065009	regulation of molecular function	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	9	162

External Links

No external refs found!