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  5. AMTR_s00166p00046540

AMTR_s00166p00046540 (LAS, SCL18,...)


Aliases : LAS, SCL18, evm_27.TU.AmTr_v1.0_scaffold00166.23

Description : External stimuli response.biotic stress.symbiont-associated response.arbuscule branching.MIG1 GRAS-type transcription factor


Gene families : OG0011629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0011629_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00166p00046540
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00166p00053380 LAS, SCL18,... External stimuli response.biotic... 0.04 OrthoFinder output from all 47 species
Solyc01g059960.1.1 RGL2, Solyc01g059960 transcription factor (GRAS). MIG1 GRAS-type transcription factor 0.05 OrthoFinder output from all 47 species
Solyc01g079370.4.1 Solyc01g079370 transcription factor (GRAS). MIG1 GRAS-type transcription factor 0.04 OrthoFinder output from all 47 species
Solyc01g079380.1.1 RGL1, RGL, Solyc01g079380 transcription factor (GRAS). MIG1 GRAS-type transcription factor 0.02 OrthoFinder output from all 47 species
Solyc06g009610.1.1 Solyc06g009610 transcription factor (GRAS). MIG1 GRAS-type transcription factor 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP HCCA
BP GO:0006952 defense response IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
BP GO:0009607 response to biotic stimulus IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 128 498
No external refs found!