AMTR_s00165p00040130 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00165.22

No description available


Gene families : OG0001375 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001375_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00165p00040130

Target Alias Description ECC score Gene Family Method Actions
Ala_g33313 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g34379 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g51804 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g18361 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0008.g011675 No alias not classified & original description: CDS=424-1788 0.03 OrthoFinder output from all 47 species
Ceric.06G029400.1 Ceric.06G029400 not classified & original description: pacid=50619375... 0.05 OrthoFinder output from all 47 species
Dac_g31135 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g37019 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g31628 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01016431001 No alias No description available 0.03 OrthoFinder output from all 47 species
Gb_34578 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g28558 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_28425g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Msp_g11680 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g28914 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g31328 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g24085 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g29028 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g29352 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0049.g013714 No alias not classified & original description: CDS=627-2135 0.03 OrthoFinder output from all 47 species
Solyc10g084970.2.1 Solyc10g084970 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Spa_g12038 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g29526 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!