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  5. AMTR_s00160p00054480

AMTR_s00160p00054480 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00160.12

Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.DOF transcription factor


Gene families : OG0000067 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000067_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00160p00054480
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
Ppi_g03743 ADOF1, DOF1 transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012148 ADOF1, DOF1 transcription factor *(DOF) & original description: CDS=1-1128 0.02 OrthoFinder output from all 47 species
Zm00001e028672_P001 Zm00001e028672 transcription factor (DOF) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0045735 nutrient reservoir activity IEP HCCA
InterPro domains Description Start Stop
IPR003851 Znf_Dof 44 79
No external refs found!