1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00160p00053540

AMTR_s00160p00053540 (DOF4.7,...)


Aliases : DOF4.7, evm_27.TU.AmTr_v1.0_scaffold00160.11

Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.DOF transcription factor


Gene families : OG0000067 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000067_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00160p00053540

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00248860 TMO6,... RNA biosynthesis.transcriptional activation.C2C2... 0.01 OrthoFinder output from all 47 species
AMTR_s00010p00264070 CDF3,... RNA biosynthesis.transcriptional activation.C2C2... 0.04 OrthoFinder output from all 47 species
AT1G21340 No alias Dof-type zinc finger DNA-binding family protein 0.02 OrthoFinder output from all 47 species
AT1G51700 ADOF1, DOF1 DOF zinc finger protein 1 0.06 OrthoFinder output from all 47 species
Als_g04849 TMO6 transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01011138001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
GSVIVT01016538001 OBP3 RNA biosynthesis.transcriptional activation.C2C2... 0.01 OrthoFinder output from all 47 species
LOC_Os08g38220.1 LOC_Os08g38220 transcription factor (DOF) 0.02 OrthoFinder output from all 47 species
Ppi_g32547 CDF3 transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Smo29617 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.01 OrthoFinder output from all 47 species
Smo89924 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.01 OrthoFinder output from all 47 species
Solyc02g078620.1.1 ADOF2, DOF2,... transcription factor (DOF) 0.02 OrthoFinder output from all 47 species
Solyc03g112930.3.1 HCA2, DOF5.6,... transcription factor (DOF) 0.01 OrthoFinder output from all 47 species
Solyc03g121400.1.1 ADOF2, DOF2,... transcription factor (DOF) 0.02 OrthoFinder output from all 47 species
Solyc08g082910.2.1 Solyc08g082910 transcription factor (DOF) 0.02 OrthoFinder output from all 47 species
Spa_g02206 TMO6 transcription factor *(DOF) & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003851 Znf_Dof 32 87
No external refs found!