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  5. AMTR_s00159p00023000

AMTR_s00159p00023000 (SPDS3, ATSPDS3, SPMS,...)


Aliases : SPDS3, ATSPDS3, SPMS, evm_27.TU.AmTr_v1.0_scaffold00159.8

Description : Polyamine metabolism.spermidine/spermine.synthesis.spermine synthase


Gene families : OG0001566 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001566_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00159p00023000
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00133330 SPDS1,... Polyamine... 0.04 OrthoFinder output from all 47 species
Aspi01Gene39972.t1 SPDS1, Aspi01Gene39972 EC_2.5 transferase transferring alkyl or aryl group,... 0.02 OrthoFinder output from all 47 species
MA_8150579g0010 SPDS1 spermidine synthase 0.03 OrthoFinder output from all 47 species
Nbi_g18482 SPDS1 EC_2.5 transferase transferring alkyl or aryl group,... 0.02 OrthoFinder output from all 47 species
Solyc06g053510.3.1 SPDS1, Solyc06g053510 Putrescine N-methyltransferase 3 OS=Nicotiana tabacum... 0.02 OrthoFinder output from all 47 species
Solyc08g014310.3.1 SPDS1, Solyc08g014310 Putrescine N-methyltransferase 2 OS=Nicotiana tabacum... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005779 obsolete integral component of peroxisomal membrane IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016559 peroxisome fission IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0048285 organelle fission IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR001045 Spermi_synthase 49 295
No external refs found!