1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00156p00066850

AMTR_s00156p00066850 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00156.35

Description : Protein JINGUBANG OS=Arabidopsis thaliana


Gene families : OG0000309 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000309_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00156p00066850
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00053p00162370 evm_27.TU.AmTr_v1... Protein JINGUBANG OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AMTR_s00059p00197160 evm_27.TU.AmTr_v1... Protein JINGUBANG OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT5G50120 No alias Transducin/WD40 repeat-like superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g023030 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g17739 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g25514 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g53257 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene05743.t1 Aspi01Gene05743 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene23389.t2 Aspi01Gene23389 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene44877.t1 Aspi01Gene44877 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene45302.t1 Aspi01Gene45302 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene60159.t1 Aspi01Gene60159 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene72933.t1 Aspi01Gene72933 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g010472 No alias not classified & original description: CDS=1-1746 0.03 OrthoFinder output from all 47 species
Ceric.12G075900.1 Ceric.12G075900 not classified & original description: pacid=50601390... 0.03 OrthoFinder output from all 47 species
Ceric.28G012400.1 Ceric.28G012400 not classified & original description: pacid=50570345... 0.02 OrthoFinder output from all 47 species
Dac_g07418 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g11331 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g35395 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g14895 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01009612001 No alias Protein JINGUBANG OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01031882001 No alias Protein JINGUBANG OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01035639001 No alias Protein JINGUBANG OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_26404 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os01g13140.1 LOC_Os01g13140 Protein JINGUBANG OS=Arabidopsis thaliana... 0.09 OrthoFinder output from all 47 species
MA_10429180g0010 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_10431396g0010 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
MA_10431396g0020 No alias no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
MA_107471g0010 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.08 OrthoFinder output from all 47 species
MA_913477g0010 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Msp_g34011 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g10069 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g19836 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g17260 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g30301 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g25659 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g08501 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g60508 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g111780.1.1 Solyc03g111780 Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc04g005020.3.1 Solyc04g005020 Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc12g044320.2.1 Solyc12g044320 Protein JINGUBANG OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Tin_g13772 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e016387_P001 Zm00001e016387 Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e026116_P001 Zm00001e026116 Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 136 165
IPR001680 WD40_repeat 328 357
IPR001680 WD40_repeat 91 125
IPR001680 WD40_repeat 232 268
IPR001680 WD40_repeat 366 408
IPR001680 WD40_repeat 197 225
IPR001680 WD40_repeat 281 314
No external refs found!