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  5. AMTR_s00155p00026110

AMTR_s00155p00026110 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00155.10

Description : U-box domain-containing protein 4 OS=Arabidopsis thaliana


Gene families : OG0001662 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001662_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00155p00026110

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0076.g037929 No alias E3 ubiquitin ligase & original description: CDS=24-2345 0.03 OrthoFinder output from all 47 species
Azfi_s0288.g063259 No alias E3 ubiquitin ligase & original description: CDS=563-3001 0.03 OrthoFinder output from all 47 species
Cba_g12238 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.27G022700.1 Ceric.27G022700 E3 ubiquitin ligase & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g06527 No alias E3 ubiquitin ligase & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g24860 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g25746 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Len_g12539 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g33642 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0143.g022871 No alias E3 ubiquitin ligase & original description: CDS=235-2637 0.03 OrthoFinder output from all 47 species
Solyc09g025270.3.1 Solyc09g025270 U-box domain-containing protein 3 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Spa_g10761 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g16420 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEA Interproscan
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 267 337
IPR000225 Armadillo 623 660
IPR000225 Armadillo 662 701
IPR000225 Armadillo 705 742
No external refs found!