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  5. AMTR_s00154p00087040

AMTR_s00154p00087040 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00154.57

No description available


Gene families : OG0000859 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000859_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00154p00087040

Target Alias Description ECC score Gene Family Method Actions
Adi_g020080 No alias component *(FES1) of FRI-C transcription effector... 0.1 OrthoFinder output from all 47 species
Adi_g051624 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Adi_g086845 No alias component *(FES1) of FRI-C transcription effector... 0.1 OrthoFinder output from all 47 species
Ala_g14556 No alias component *(FES1) of FRI-C transcription effector... 0.05 OrthoFinder output from all 47 species
Ala_g38718 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Als_g05138 No alias component *(FES1) of FRI-C transcription effector... 0.02 OrthoFinder output from all 47 species
Als_g21455 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g22679 No alias component *(FES1) of FRI-C transcription effector... 0.04 OrthoFinder output from all 47 species
Aop_g31626 No alias component *(FES1) of FRI-C transcription effector... 0.05 OrthoFinder output from all 47 species
Aspi01Gene00676.t1 Aspi01Gene00676 component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Ceric.20G066500.1 Ceric.20G066500 component *(FES1) of FRI-C transcription effector... 0.04 OrthoFinder output from all 47 species
Ceric.29G050700.1 Ceric.29G050700 component *(FES1) of FRI-C transcription effector... 0.06 OrthoFinder output from all 47 species
Cre01.g003450 No alias No description available 0.03 OrthoFinder output from all 47 species
Dcu_g07178 No alias component *(FES1) of FRI-C transcription effector... 0.07 OrthoFinder output from all 47 species
Ehy_g16622 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Ehy_g18865 No alias component *(FES1) of FRI-C transcription effector... 0.05 OrthoFinder output from all 47 species
Ehy_g26937 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
GSVIVT01010035001 ACCD RNA biosynthesis.transcriptional activation.C3H zinc... 0.05 OrthoFinder output from all 47 species
Gb_00875 No alias C3H zinc finger transcription factor 0.06 OrthoFinder output from all 47 species
Gb_19122 No alias C3H zinc finger transcription factor 0.05 OrthoFinder output from all 47 species
Gb_26302 No alias C3H zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
LOC_Os05g41790.1 LOC_Os05g41790 C3H zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
LOC_Os08g04170.1 LOC_Os08g04170 C3H zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
Len_g20647 No alias component *(FES1) of FRI-C transcription effector... 0.07 OrthoFinder output from all 47 species
Len_g22996 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Lfl_g21498 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g29094 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
MA_111475g0010 No alias Zinc finger CCCH domain-containing protein 55 OS=Oryza... 0.04 OrthoFinder output from all 47 species
MA_111475g0020 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
MA_321233g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_8408g0030 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp1g05400.1 No alias Zinc finger CCCH domain-containing protein 55 OS=Oryza... 0.03 OrthoFinder output from all 47 species
Msp_g15688 No alias component *(FES1) of FRI-C transcription effector... 0.04 OrthoFinder output from all 47 species
Msp_g19470 No alias component *(FES1) of FRI-C transcription effector... 0.04 OrthoFinder output from all 47 species
Ore_g08246 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g44437 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g41479 No alias component *(FES1) of FRI-C transcription effector... 0.02 OrthoFinder output from all 47 species
Pnu_g00004 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Ppi_g08786 No alias component *(FES1) of FRI-C transcription effector... 0.02 OrthoFinder output from all 47 species
Solyc03g006350.3.1 FES1, Solyc03g006350 C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Spa_g53143 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e040314_P001 Zm00001e040314 C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005665 RNA polymerase II, core complex IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0016998 cell wall macromolecule catabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR000061 Surp 341 391
No external refs found!