AMTR_s00154p00076410 (CDC48B,...)

Aliases : CDC48B, evm_27.TU.AmTr_v1.0_scaffold00154.50

Description : Cell division control protein 48 homolog B OS=Arabidopsis thaliana

Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00154p00076410

Target	Alias	Description	ECC score	Gene Family Method
AT3G56690	CIP111	Cam interacting protein 111	0.03	OrthoFinder output from all 47 species
Aev_g20068	CIP111	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0115.g046252	emb1354, CDC48C	platform ATPase CDC48 & original description: CDS=1-2478	0.03	OrthoFinder output from all 47 species
Cba_g10573	No alias	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g15787	CDC48B	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g22418	No alias	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g77518	No alias	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g02340	No alias	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os04g42110.1	CDC48B, LOC_Os04g42110	Cell division control protein 48 homolog B...	0.02	OrthoFinder output from all 47 species
Msp_g15410	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g31553	CDC48B	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003605	CDC48B	not classified & original description: CDS=1-351	0.02	OrthoFinder output from all 47 species
Solyc05g012190.3.1	CDC48B, Solyc05g012190	Cell division control protein 48 homolog B...	0.02	OrthoFinder output from all 47 species
Spa_g11219	CDC48B	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005739	mitochondrion	IEP	HCCA
CC	GO:0005789	endoplasmic reticulum membrane	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003959	ATPase_AAA_core	110	245
IPR003959	ATPase_AAA_core	381	516

External Links

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AMTR_s00154p00076410 (CDC48B,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation