AMTR_s00154p00046110 (RPA70B, ATRPA70B,...)

Aliases : RPA70B, ATRPA70B, evm_27.TU.AmTr_v1.0_scaffold00154.28

Description : Cell cycle.mitosis and meiosis.meiotic recombination.DNA strand exchange.RPA presynaptic filament assembly factor complex.RPA1 component

Gene families : OG0003997 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003997_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00154p00046110
Cluster	HCCA: Cluster_100

Target	Alias	Description	ECC score	Gene Family Method
AT5G08020	RPA70B, ATRPA70B	RPA70-kDa subunit B	0.16	OrthoFinder output from all 47 species
AT5G61000	RPA70D, ATRPA70D	Replication factor-A protein 1-related	0.13	OrthoFinder output from all 47 species
Ala_g25088	RPA70D, ATRPA70D	component *(RPA1) of RPA presynaptic filament assembly...	0.03	OrthoFinder output from all 47 species
Als_g07217	RPA70D, ATRPA70D	component *(RPA1) of RPA presynaptic filament assembly...	0.07	OrthoFinder output from all 47 species
Als_g08320	RPA70D, ATRPA70D	component *(RPA1) of RPA presynaptic filament assembly...	0.08	OrthoFinder output from all 47 species
Aob_g35454	RPA70D, ATRPA70D	component *(RPA1) of RPA presynaptic filament assembly...	0.02	OrthoFinder output from all 47 species
Aop_g21131	RPA70B, ATRPA70B	component *(RPA1) of RPA presynaptic filament assembly...	0.13	OrthoFinder output from all 47 species
Aspi01Gene25029.t1	RPA70D,...	component *(RPA1) of RPA presynaptic filament assembly...	0.04	OrthoFinder output from all 47 species
Aspi01Gene32891.t1	RPA70B,...	component *(RPA1) of RPA presynaptic filament assembly...	0.11	OrthoFinder output from all 47 species
Azfi_s0093.g043249	RPA70D, ATRPA70D	component *(RPA1) of RPA presynaptic filament assembly...	0.03	OrthoFinder output from all 47 species
Ceric.18G083500.1	RPA70B,...	component *(RPA1) of RPA presynaptic filament assembly...	0.2	OrthoFinder output from all 47 species
Cre16.g651000	RPA70D, ATRPA70D	Cell cycle.mitosis and meiosis.meiotic recombination.DNA...	0.06	OrthoFinder output from all 47 species
Dac_g20470	RPA70D, ATRPA70D	component *(RPA1) of RPA presynaptic filament assembly...	0.11	OrthoFinder output from all 47 species
Dcu_g11388	RPA70D, ATRPA70D	component *(RPA1) of RPA presynaptic filament assembly...	0.13	OrthoFinder output from all 47 species
GSVIVT01007849001	RPA70B, ATRPA70B	Cell cycle.mitosis and meiosis.meiotic recombination.DNA...	0.17	OrthoFinder output from all 47 species
Gb_17349	RPA70B, ATRPA70B	component RPA1 of single-stranded-DNA binding RPA...	0.16	OrthoFinder output from all 47 species
LOC_Os03g11540.1	RPA70B,...	component RPA1 of single-stranded-DNA binding RPA...	0.19	OrthoFinder output from all 47 species
Len_g04778	RPA70D, ATRPA70D	component *(RPA1) of RPA presynaptic filament assembly...	0.06	OrthoFinder output from all 47 species
Lfl_g30854	RPA70B, ATRPA70B	component *(RPA1) of RPA presynaptic filament assembly...	0.09	OrthoFinder output from all 47 species
MA_10308567g0040	RPA70B, ATRPA70B	Replication protein A 70 kDa DNA-binding subunit B...	0.06	OrthoFinder output from all 47 species
MA_10327014g0020	RPA70B, ATRPA70B	component RPA1 of RPA presynaptic filament assembly...	0.05	OrthoFinder output from all 47 species
MA_10356314g0010	No alias	Replication protein A 70 kDa DNA-binding subunit B...	0.06	OrthoFinder output from all 47 species
MA_10379695g0010	RPA70D, ATRPA70D	Replication protein A 70 kDa DNA-binding subunit B...	0.02	OrthoFinder output from all 47 species
MA_10393806g0010	RPA70B, ATRPA70B	Replication protein A 70 kDa DNA-binding subunit B...	0.05	OrthoFinder output from all 47 species
Mp2g17030.1	RPA70D, ATRPA70D	component RPA1 of single-stranded-DNA binding RPA...	0.16	OrthoFinder output from all 47 species
Msp_g06104	RPA70B, ATRPA70B	component *(RPA1) of RPA presynaptic filament assembly...	0.14	OrthoFinder output from all 47 species
Nbi_g08948	RPA70B, ATRPA70B	component *(RPA1) of RPA presynaptic filament assembly...	0.16	OrthoFinder output from all 47 species
Ppi_g40052	RPA70B, ATRPA70B	component *(RPA1) of RPA presynaptic filament assembly...	0.08	OrthoFinder output from all 47 species
Solyc03g115050.3.1	RPA70B,...	component RPA1 of single-stranded-DNA binding RPA...	0.21	OrthoFinder output from all 47 species
Spa_g41654	RPA70D, ATRPA70D	component *(RPA1) of RPA presynaptic filament assembly...	0.1	OrthoFinder output from all 47 species
Tin_g07108	RPA70D, ATRPA70D	component *(RPA1) of RPA presynaptic filament assembly...	0.11	OrthoFinder output from all 47 species
Zm00001e000841_P002	RPA70B,...	component RPA1 of single-stranded-DNA binding RPA...	0.14	OrthoFinder output from all 47 species
Zm00001e038720_P001	RPA70B,...	component RPA1 of single-stranded-DNA binding RPA...	0.13	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	HCCA
BP	GO:0000725	recombinational repair	IEP	HCCA
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
CC	GO:0005875	microtubule associated complex	IEP	HCCA
BP	GO:0006270	DNA replication initiation	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006302	double-strand break repair	IEP	HCCA
BP	GO:0006304	DNA modification	IEP	HCCA
BP	GO:0006305	DNA alkylation	IEP	HCCA
BP	GO:0006306	DNA methylation	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007018	microtubule-based movement	IEP	HCCA
BP	GO:0007090	obsolete regulation of S phase of mitotic cell cycle	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
CC	GO:0042555	MCM complex	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0044728	DNA methylation or demethylation	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004365	NA-bd_OB_tRNA	152	238
IPR007199	Rep_factor-A_N	5	69
IPR013955	Rep_factor-A_C	430	574

External Links

No external refs found!

AMTR_s00154p00046110 (RPA70B, ATRPA70B,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation