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  5. AMTR_s00153p00073330

AMTR_s00153p00073330 (TAF15b,...)


Aliases : TAF15b, evm_27.TU.AmTr_v1.0_scaffold00153.37

Description : Transcription initiation factor TFIID subunit 15b OS=Arabidopsis thaliana


Gene families : OG0003283 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003283_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00153p00073330

Target Alias Description ECC score Gene Family Method Actions
AT5G58470 TAF15b TBP-associated factor 15B 0.05 OrthoFinder output from all 47 species
Adi_g056334 TAF15b not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g079487 TAF15b not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17639 TAF15b not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g40095 TAF15b not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g03332 TAF15b not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g13937 TAF15b not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07541 TAF15b not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.19G014000.1 TAF15b, Ceric.19G014000 not classified & original description: pacid=50575256... 0.04 OrthoFinder output from all 47 species
Dac_g21783 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g12088 TAF15b not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g46266 TAF15b not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g14874 TAF15b not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_25472 TAF15b no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os01g07070.2 TAF15b, LOC_Os01g07070 Transcription initiation factor TFIID subunit 15b... 0.07 OrthoFinder output from all 47 species
Len_g23680 TAF15b not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g36395 TAF15b not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10427252g0010 TAF15b Transcription initiation factor TFIID subunit 15b... 0.06 OrthoFinder output from all 47 species
Pir_g06028 TAF15b not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g11171 TAF15b not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g11892 TAF15b not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013936 TAF15b not classified & original description: CDS=120-1466 0.04 OrthoFinder output from all 47 species
Sam_g39313 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc06g082220.4.1 TAF15b, Solyc06g082220 Transcription initiation factor TFIID subunit 15b... 0.08 OrthoFinder output from all 47 species
Spa_g22431 TAF15b not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g23356 TAF15b not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e016824_P001 TAF15b, Zm00001e016824 Transcription initiation factor TFIID subunit 15b... 0.04 OrthoFinder output from all 47 species
Zm00001e025837_P001 TAF15b, Zm00001e025837 Transcription initiation factor TFIID subunit 15b... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005622 intracellular anatomical structure IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 338 368
IPR001876 Znf_RanBP2 53 84
No external refs found!