AMTR_s00149p00072640 (PUB22,...)

Aliases : PUB22, evm_27.TU.AmTr_v1.0_scaffold00149.52

Description : E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana

Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00149p00072640

Target	Alias	Description	ECC score	Gene Family Method
Aev_g15461	CMPG2, ATCMPG2	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Als_g11423	PUB15	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g23643	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Als_g30969	PUB25	U-Box-group-III E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Als_g60936	PUB25	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g01235	PUB26	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g15330	PUB26	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g20185	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g04774	PUB25	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g18761	PUB29, ATPUB29	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene15674.t1	PUB26, Aspi01Gene15674	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene44314.t1	PUB23, Aspi01Gene44314	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene44315.t1	PUB23, Aspi01Gene44315	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene44316.t1	PUB23, Aspi01Gene44316	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene44317.t1	PUB23, Aspi01Gene44317	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene44318.t1	PUB23, Aspi01Gene44318	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene44320.t1	PUB23, Aspi01Gene44320	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene44321.t1	PUB23, Aspi01Gene44321	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g31575	No alias	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Gb_19502	PUB23	U-box domain-containing protein 25 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
Gb_27794	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Gb_29734	PUB25	U-box domain-containing protein 25 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
LOC_Os02g46500.1	PUB23, LOC_Os02g46500	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.01	OrthoFinder output from all 47 species
LOC_Os02g50460.1	LOC_Os02g50460	U-box domain-containing protein 20 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os03g13740.1	LOC_Os03g13740	U-box domain-containing protein 20 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os04g34030.1	PUB23, LOC_Os04g34030	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
LOC_Os04g58920.1	PUB23, LOC_Os04g58920	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os06g13870.1	LOC_Os06g13870	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os12g06410.1	PUB24, LOC_Os12g06410	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
MA_10432813g0010	PUB22	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_61761g0010	PUB25	U-box domain-containing protein 25 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Ore_g03662	CMPG2, ATCMPG2	E3 ubiquitin ligase & original description: none	0.01	OrthoFinder output from all 47 species
Solyc11g068940.1.1	PUB24, Solyc11g068940	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Zm00001e006484_P001	PUB23, Zm00001e006484	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Zm00001e007109_P001	PUB23, Zm00001e007109	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Zm00001e014752_P001	PUB23, Zm00001e014752	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Zm00001e022698_P001	PUB26, Zm00001e022698	U-box domain-containing protein 25 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Zm00001e036030_P001	Zm00001e036030	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	HCCA
BP	GO:0000271	polysaccharide biosynthetic process	IEP	HCCA
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	HCCA
MF	GO:0004650	polygalacturonase activity	IEP	HCCA
MF	GO:0005319	lipid transporter activity	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0005984	disaccharide metabolic process	IEP	HCCA
BP	GO:0005985	sucrose metabolic process	IEP	HCCA
BP	GO:0005986	sucrose biosynthetic process	IEP	HCCA
BP	GO:0006073	cellular glucan metabolic process	IEP	HCCA
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	HCCA
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	HCCA
BP	GO:0006869	lipid transport	IEP	HCCA
MF	GO:0008146	sulfotransferase activity	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
BP	GO:0009250	glucan biosynthetic process	IEP	HCCA
BP	GO:0009311	oligosaccharide metabolic process	IEP	HCCA
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0016782	transferase activity, transferring sulphur-containing groups	IEP	HCCA
MF	GO:0016791	phosphatase activity	IEP	HCCA
MF	GO:0017089	glycolipid transfer activity	IEP	HCCA
MF	GO:0019203	carbohydrate phosphatase activity	IEP	HCCA
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
BP	GO:0044042	glucan metabolic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
MF	GO:0045735	nutrient reservoir activity	IEP	HCCA
BP	GO:0046351	disaccharide biosynthetic process	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
BP	GO:0046836	glycolipid transport	IEP	HCCA
MF	GO:0050307	sucrose-phosphate phosphatase activity	IEP	HCCA
MF	GO:0050308	sugar-phosphatase activity	IEP	HCCA
BP	GO:0051273	beta-glucan metabolic process	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA
MF	GO:0051861	glycolipid binding	IEP	HCCA
CC	GO:0098797	plasma membrane protein complex	IEP	HCCA
MF	GO:0120013	lipid transfer activity	IEP	HCCA
BP	GO:1901264	carbohydrate derivative transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	12	83

External Links

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AMTR_s00149p00072640 (PUB22,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation