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  5. AMTR_s00149p00067630

AMTR_s00149p00067630 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00149.44

Description : Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0004930 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004930_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00149p00067630
Cluster HCCA: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
AT4G16390 SVR7 pentatricopeptide (PPR) repeat-containing protein 0.04 OrthoFinder output from all 47 species
AT5G46580 No alias pentatricopeptide (PPR) repeat-containing protein 0.05 OrthoFinder output from all 47 species
Adi_g113698 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02200 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g01055 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g07311 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g08499 EMB2750 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene39761.t1 Aspi01Gene39761 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g03973 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.15G014300.1 Ceric.15G014300 not classified & original description: pacid=50639905... 0.03 OrthoFinder output from all 47 species
Dac_g15325 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17091 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g07226 SVR7 not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01003493001 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.06 OrthoFinder output from all 47 species
GSVIVT01003496001 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.03 OrthoFinder output from all 47 species
Gb_19282 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.04 OrthoFinder output from all 47 species
Lfl_g05655 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_283144g0010 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.03 OrthoFinder output from all 47 species
Msp_g09352 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g01171 SVR7 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g35489 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g11215 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc08g077140.1.1 Solyc08g077140 Pentatricopeptide repeat-containing protein At5g46580,... 0.04 OrthoFinder output from all 47 species
Solyc11g012670.1.1 SVR7, Solyc11g012670 Pentatricopeptide repeat-containing protein At4g16390,... 0.04 OrthoFinder output from all 47 species
Zm00001e000850_P001 SVR7, Zm00001e000850 Pentatricopeptide repeat-containing protein ATP4,... 0.03 OrthoFinder output from all 47 species
Zm00001e006409_P001 Zm00001e006409 Pentatricopeptide repeat-containing protein At5g46580,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 39 67
IPR002885 Pentatricopeptide_repeat 388 408
IPR002885 Pentatricopeptide_repeat 283 327
IPR002885 Pentatricopeptide_repeat 214 261
IPR002885 Pentatricopeptide_repeat 71 114
IPR002885 Pentatricopeptide_repeat 141 187
No external refs found!