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  5. AMTR_s00149p00026500

AMTR_s00149p00026500 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00149.8

Description : Cytoskeleton.actin and tubulin folding.CCT chaperonin folding complex.CCT2 beta subunit


Gene families : OG0005353 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005353_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00149p00026500

Target Alias Description ECC score Gene Family Method Actions
AT5G20890 No alias TCP-1/cpn60 chaperonin family protein 0.07 OrthoFinder output from all 47 species
Aev_g24601 No alias subunit beta *(CCT2) of CCT chaperonin folding complex &... 0.02 OrthoFinder output from all 47 species
Aob_g06619 No alias subunit beta *(CCT2) of CCT chaperonin folding complex &... 0.02 OrthoFinder output from all 47 species
Azfi_s0251.g060285 No alias subunit beta *(CCT2) of CCT chaperonin folding complex &... 0.04 OrthoFinder output from all 47 species
Ceric.02G085300.1 Ceric.02G085300 subunit beta *(CCT2) of CCT chaperonin folding complex &... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020903.30 No alias Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.02 OrthoFinder output from all 47 species
Cre09.g416750 No alias Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.05 OrthoFinder output from all 47 species
Dac_g00849 No alias subunit beta *(CCT2) of CCT chaperonin folding complex &... 0.04 OrthoFinder output from all 47 species
Dcu_g14728 No alias subunit beta *(CCT2) of CCT chaperonin folding complex &... 0.05 OrthoFinder output from all 47 species
Ehy_g02581 No alias subunit beta *(CCT2) of CCT chaperonin folding complex &... 0.03 OrthoFinder output from all 47 species
GSVIVT01008708001 No alias Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.06 OrthoFinder output from all 47 species
LOC_Os03g42220.1 LOC_Os03g42220 CCT2 subunit beta of CCT chaperonin folding complex 0.09 OrthoFinder output from all 47 species
LOC_Os05g48290.3 LOC_Os05g48290 CCT2 subunit beta of CCT chaperonin folding complex 0.08 OrthoFinder output from all 47 species
Len_g15421 No alias subunit beta *(CCT2) of CCT chaperonin folding complex &... 0.03 OrthoFinder output from all 47 species
MA_10434959g0010 No alias CCT2 subunit beta of CCT chaperonin folding complex 0.05 OrthoFinder output from all 47 species
Mp5g16030.1 No alias CCT2 subunit beta of CCT chaperonin folding complex 0.05 OrthoFinder output from all 47 species
Nbi_g03110 No alias subunit beta *(CCT2) of CCT chaperonin folding complex &... 0.04 OrthoFinder output from all 47 species
Ore_g15486 No alias subunit beta *(CCT2) of CCT chaperonin folding complex &... 0.03 OrthoFinder output from all 47 species
Pp3c6_15940V3.1 Pp3c6_15940 TCP-1/cpn60 chaperonin family protein 0.02 OrthoFinder output from all 47 species
Sam_g12467 No alias subunit beta *(CCT2) of CCT chaperonin folding complex &... 0.02 OrthoFinder output from all 47 species
Smo171093 No alias Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.04 OrthoFinder output from all 47 species
Solyc11g069000.2.1 Solyc11g069000 CCT2 subunit beta of CCT chaperonin folding complex 0.08 OrthoFinder output from all 47 species
Spa_g11138 No alias subunit beta *(CCT2) of CCT chaperonin folding complex &... 0.04 OrthoFinder output from all 47 species
Zm00001e017228_P001 Zm00001e017228 CCT2 subunit beta of CCT chaperonin folding complex 0.06 OrthoFinder output from all 47 species
Zm00001e025595_P002 Zm00001e025595 CCT2 subunit beta of CCT chaperonin folding complex 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004827 proline-tRNA ligase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006433 prolyl-tRNA aminoacylation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008565 obsolete protein transporter activity IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR002423 Cpn60/GroEL/TCP-1 30 518
No external refs found!