AMTR_s00148p00100780 (AtRABA5a, RABA5a,...)

Aliases : AtRABA5a, RABA5a, evm_27.TU.AmTr_v1.0_scaffold00148.70

Description : Ras-related protein RABA5a OS=Arabidopsis thaliana

Gene families : OG0000247 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000247_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00148p00100780

Target	Alias	Description	ECC score	Gene Family Method
AT1G05810	ARA-1, ATRABA5E,...	RAB GTPase homolog A5E	0.03	OrthoFinder output from all 47 species
AT1G28550	RABA1i, AtRABA1i	RAB GTPase homolog A1I	0.03	OrthoFinder output from all 47 species
AT1G73640	RABA6a, AtRABA6a	RAB GTPase homolog A6A	0.03	OrthoFinder output from all 47 species
AT2G33870	ArRABA1h	RAB GTPase homolog A1H	0.04	OrthoFinder output from all 47 species
Adi_g081036	AtRABA5d, RABA5d	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g110503	ATHSGBP, RABA1d,...	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g18147	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g29604	AtRABA5d, RABA5d	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g22467	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g42193	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0056.g034200	AtRABA1f, RABA1f	A-class RAB GTPase & original description: CDS=99-740	0.03	OrthoFinder output from all 47 species
Azfi_s2632.g112466	ATRABA2A,...	A-class RAB GTPase & original description: CDS=274-942	0.02	OrthoFinder output from all 47 species
Ceric.27G012200.1	ATRABA2A,...	A-class RAB GTPase & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.32G031600.1	ATRABA5C, ARA4,...	A-class RAB GTPase & original description:...	0.02	OrthoFinder output from all 47 species
Ceric.34G031100.1	AtRABA1f,...	A-class RAB GTPase & original description:...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020961.97	AtRABA1e, RABA1e	Vesicle trafficking.regulation of membrane tethering and...	0.02	OrthoFinder output from all 47 species
Dac_g01462	ATRABA2A,...	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g15893	AtRABA5a, RABA5a	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g08021	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g40522	ATRABA2A,...	A-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g00471	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g00786	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g02057	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g02093	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g05302	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os07g44040.1	AtRABA5a,...	A-class RAB GTPase	0.02	OrthoFinder output from all 47 species
LOC_Os09g15790.1	AtRABA1f,...	A-class RAB GTPase	0.03	OrthoFinder output from all 47 species
Len_g03672	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Len_g16053	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
MpVg00760.1	AtRABA1f, RABA1f	No annotation	0.03	OrthoFinder output from all 47 species
Msp_g09974	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g23851	AtRABA5a, RABA5a	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g14192	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g20309	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Pp3c1_28210V3.1	RABA2b,...	RAB GTPase homolog A2B	0.01	OrthoFinder output from all 47 species
Sam_g30254	No alias	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Solyc02g072180.3.1	ATHSGBP, RABA1d,...	A-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Solyc03g006270.3.1	AtRABA1f,...	A-class RAB GTPase	0.06	OrthoFinder output from all 47 species
Solyc03g118820.4.1	RABA6a,...	A-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Solyc09g098170.4.1	AtRABA5d,...	A-class RAB GTPase	0.04	OrthoFinder output from all 47 species
Tin_g05879	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e009700_P001	AtRABA1f,...	A-class RAB GTPase	0.03	OrthoFinder output from all 47 species
Zm00001e033825_P001	AtRABA1f,...	A-class RAB GTPase	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007264	small GTPase mediated signal transduction	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004497	monooxygenase activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005856	cytoskeleton	IEP	HCCA
BP	GO:0006020	inositol metabolic process	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0006909	phagocytosis	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	HCCA
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	HCCA
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	HCCA
BP	GO:0019310	inositol catabolic process	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0044275	cellular carbohydrate catabolic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0044282	small molecule catabolic process	IEP	HCCA
BP	GO:0046164	alcohol catabolic process	IEP	HCCA
BP	GO:0046174	polyol catabolic process	IEP	HCCA
MF	GO:0050113	inositol oxygenase activity	IEP	HCCA
MF	GO:0051287	NAD binding	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901616	organic hydroxy compound catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	17	89

External Links

No external refs found!

AMTR_s00148p00100780 (AtRABA5a, RABA5a,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation