1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00148p00068590

AMTR_s00148p00068590 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00148.42

Description : E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana


Gene families : OG0000599 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000599_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00148p00068590

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00020480 evm_27.TU.AmTr_v1... E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT1G08050 No alias Zinc finger (C3HC4-type RING finger) family protein 0.04 OrthoFinder output from all 47 species
AT2G22680 No alias Zinc finger (C3HC4-type RING finger) family protein 0.04 OrthoFinder output from all 47 species
AT2G38970 No alias Zinc finger (C3HC4-type RING finger) family protein 0.04 OrthoFinder output from all 47 species
AT5G49665 No alias Zinc finger (C3HC4-type RING finger) family protein 0.07 OrthoFinder output from all 47 species
Aop_g13092 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g13238 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene56860.t1 Aspi01Gene56860 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0233.g059408 No alias not classified & original description: CDS=358-2805 0.02 OrthoFinder output from all 47 species
Cba_g23778 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cre12.g500550 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g16735 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g32441 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g38041 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g48753 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g49144 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g50945 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g07928 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g10552 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01013615001 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01016259001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.06 OrthoFinder output from all 47 species
GSVIVT01019190001 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_24701 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_30682 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os03g04890.1 LOC_Os03g04890 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os04g42980.1 LOC_Os04g42980 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os08g03270.1 LOC_Os08g03270 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
LOC_Os10g32740.1 LOC_Os10g32740 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os10g32760.1 LOC_Os10g32760 Probable E3 ubiquitin-protein ligase WAVH2... 0.05 OrthoFinder output from all 47 species
LOC_Os12g24390.1 LOC_Os12g24390 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Lfl_g05684 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g21332 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_11225g0010 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_129331g0010 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_218345g0010 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_2719537g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_7835328g0010 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Msp_g15586 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g24649 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g08356 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005076 No alias not classified & original description: CDS=439-2763 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007353 No alias not classified & original description: CDS=1-2007 0.02 OrthoFinder output from all 47 species
Smo444452 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc05g056140.4.1 Solyc05g056140 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc11g069600.2.1 Solyc11g069600 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Spa_g14357 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g14647 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g38756 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g50317 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g10599 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e000344_P001 Zm00001e000344 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.08 OrthoFinder output from all 47 species
Zm00001e004621_P001 Zm00001e004621 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Zm00001e008822_P002 Zm00001e008822 ubiquitin protein ligase (WAV3) 0.02 OrthoFinder output from all 47 species
Zm00001e016170_P004 Zm00001e016170 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e023647_P001 Zm00001e023647 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e040514_P001 Zm00001e040514 ubiquitin protein ligase (WAV3) 0.03 OrthoFinder output from all 47 species
Zm00001e041206_P001 Zm00001e041206 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0008375 acetylglucosaminyltransferase activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0046903 secretion IEP HCCA
MF GO:0048037 obsolete cofactor binding IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 6 39
No external refs found!