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  5. AMTR_s00145p00032450

AMTR_s00145p00032450 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00145.8

No description available


Gene families : OG0000618 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000618_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00145p00032450
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AT5G02580 No alias Plant protein 1589 of unknown function 0.04 OrthoFinder output from all 47 species
Ceric.06G036100.1 Ceric.06G036100 not classified & original description: pacid=50620795... 0.04 OrthoFinder output from all 47 species
Dac_g19670 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g18764 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g09888 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_626270g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g46047 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g33093 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc05g054750.3.1 Solyc05g054750 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR006476 CHP01589_pln 13 65
No external refs found!