AMTR_s00142p00073110 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00142.44

Description : Pentatricopeptide repeat-containing protein At1g73400, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00142p00073110

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00121040 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g77360,... 0.04 OrthoFinder output from all 47 species
AMTR_s00023p00240990 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g55630... 0.03 OrthoFinder output from all 47 species
AMTR_s00078p00045650 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g52640,... 0.05 OrthoFinder output from all 47 species
AMTR_s00105p00044870 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g71060,... 0.03 OrthoFinder output from all 47 species
AMTR_s00119p00029960 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g15010,... 0.05 OrthoFinder output from all 47 species
AMTR_s00119p00084460 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27800,... 0.05 OrthoFinder output from all 47 species
AMTR_s00131p00098210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g13040,... 0.07 OrthoFinder output from all 47 species
AT1G71060 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 OrthoFinder output from all 47 species
AT3G15200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G16010 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G22670 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G61360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G62470 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
AT5G15010 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G43820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
Adi_g057762 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g03187 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g06010 No alias group-II intron mitochondrial splicing factor *(MISF68)... 0.03 OrthoFinder output from all 47 species
Aev_g08644 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g01092 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54972 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g15608 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g00769 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene31661.t1 Aspi01Gene31661 group-II intron mitochondrial splicing factor *(MISF68)... 0.03 OrthoFinder output from all 47 species
Aspi01Gene32543.t1 Aspi01Gene32543 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene63883.t1 Aspi01Gene63883 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene63884.t1 Aspi01Gene63884 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene63898.t1 Aspi01Gene63898 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene64236.t1 Aspi01Gene64236 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g10252 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.09G082800.1 Ceric.09G082800 not classified & original description: pacid=50587508... 0.03 OrthoFinder output from all 47 species
Dac_g07022 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dac_g07047 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g11222 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g21182 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g27861 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g03049 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g03918 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g05532 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g32634 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g39023 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g06106 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g50968 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13495 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g14509 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g17496 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008815001 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.04 OrthoFinder output from all 47 species
GSVIVT01015982001 No alias Pentatricopeptide repeat-containing protein At1g80880,... 0.04 OrthoFinder output from all 47 species
GSVIVT01017111001 No alias Pentatricopeptide repeat-containing protein At3g16010... 0.04 OrthoFinder output from all 47 species
GSVIVT01017293001 No alias Pentatricopeptide repeat-containing protein At1g52640,... 0.03 OrthoFinder output from all 47 species
GSVIVT01027388001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.04 OrthoFinder output from all 47 species
GSVIVT01029740001 No alias Pentatricopeptide repeat-containing protein At3g62470,... 0.02 OrthoFinder output from all 47 species
Gb_08432 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.06 OrthoFinder output from all 47 species
Gb_11871 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.05 OrthoFinder output from all 47 species
Gb_12874 No alias Pentatricopeptide repeat-containing protein At3g61360... 0.04 OrthoFinder output from all 47 species
Gb_13617 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.04 OrthoFinder output from all 47 species
Gb_32987 No alias Pentatricopeptide repeat-containing protein At5g18390,... 0.05 OrthoFinder output from all 47 species
LOC_Os01g05860.1 LOC_Os01g05860 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os02g52220.1 LOC_Os02g52220 Pentatricopeptide repeat-containing protein At1g73400,... 0.03 OrthoFinder output from all 47 species
LOC_Os03g11020.1 LOC_Os03g11020 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os03g51840.1 LOC_Os03g51840 Pentatricopeptide repeat-containing protein At3g49730... 0.03 OrthoFinder output from all 47 species
LOC_Os08g28180.1 LOC_Os08g28180 Pentatricopeptide repeat-containing protein At2g13420,... 0.04 OrthoFinder output from all 47 species
Len_g19159 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g06707 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g29766 OTP43 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10432868g0030 No alias Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
MA_12748g0020 No alias Pentatricopeptide repeat-containing protein At1g79540... 0.06 OrthoFinder output from all 47 species
MA_21580g0010 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.03 OrthoFinder output from all 47 species
MA_355286g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.03 OrthoFinder output from all 47 species
MA_38485g0010 No alias Pentatricopeptide repeat-containing protein At1g63080,... 0.04 OrthoFinder output from all 47 species
MA_61663g0010 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.03 OrthoFinder output from all 47 species
MA_8206159g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.04 OrthoFinder output from all 47 species
MA_933431g0010 No alias Pentatricopeptide repeat-containing protein At1g20300,... 0.04 OrthoFinder output from all 47 species
Msp_g08820 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g08945 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g34573 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g38104 No alias splicing factor *(SLO3) & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g13278 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g27162 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008361 No alias not classified & original description: CDS=1-1977 0.03 OrthoFinder output from all 47 species
Sam_g17038 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g097730.4.1 Solyc01g097730 Pentatricopeptide repeat-containing protein At3g60050... 0.03 OrthoFinder output from all 47 species
Solyc03g112560.4.1 Solyc03g112560 Pentatricopeptide repeat-containing protein At1g80550,... 0.03 OrthoFinder output from all 47 species
Solyc03g116540.1.1 Solyc03g116540 Pentatricopeptide repeat-containing protein At1g52640,... 0.03 OrthoFinder output from all 47 species
Solyc09g082390.3.1 Solyc09g082390 Pentatricopeptide repeat-containing protein At3g22670,... 0.03 OrthoFinder output from all 47 species
Solyc09g097840.2.1 Solyc09g097840 Pentatricopeptide repeat-containing protein At5g18390,... 0.03 OrthoFinder output from all 47 species
Solyc11g071670.2.1 Solyc11g071670 Putative pentatricopeptide repeat-containing protein... 0.08 OrthoFinder output from all 47 species
Spa_g12536 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g47474 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06924 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g21176 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e005446_P003 Zm00001e005446 group-II intron mitochondrial splicing factor (MISF68) 0.04 OrthoFinder output from all 47 species
Zm00001e006773_P001 Zm00001e006773 Pentatricopeptide repeat-containing protein At1g80550,... 0.03 OrthoFinder output from all 47 species
Zm00001e013118_P001 Zm00001e013118 Pentatricopeptide repeat-containing protein At3g61360... 0.03 OrthoFinder output from all 47 species
Zm00001e025816_P001 Zm00001e025816 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Zm00001e028873_P001 Zm00001e028873 Pentatricopeptide repeat-containing protein At5g15010,... 0.03 OrthoFinder output from all 47 species
Zm00001e036197_P001 Zm00001e036197 Pentatricopeptide repeat-containing protein At1g71060,... 0.03 OrthoFinder output from all 47 species
Zm00001e036305_P001 Zm00001e036305 Pentatricopeptide repeat-containing protein At3g25210,... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 314 363
IPR002885 Pentatricopeptide_repeat 392 433
IPR002885 Pentatricopeptide_repeat 454 501
IPR002885 Pentatricopeptide_repeat 245 290
No external refs found!