1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00140p00108000

AMTR_s00140p00108000 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00140.53

No description available


Gene families : OG0004064 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004064_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00140p00108000
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
Adi_g057756 No alias E3 ubiquitin ligase *(STUBL5) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g03845 No alias E3 ubiquitin ligase *(STUBL5) & original description: none 0.06 OrthoFinder output from all 47 species
Als_g27301 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01016162001 No alias No description available 0.04 OrthoFinder output from all 47 species
Len_g08342 No alias E3 ubiquitin ligase *(STUBL5) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g19880 No alias E3 ubiquitin ligase *(STUBL5) & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g15104 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo405044 No alias No description available 0.04 OrthoFinder output from all 47 species
Tin_g20079 No alias E3 ubiquiTin ligase *(STUBL5) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e033564_P001 Zm00001e033564 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!